RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 CUL9Q8IWT3 2517 aa16.41■□□□□ 0.22
HDAC3-213ENST00000492506 PHF20L1A8MW92 1017 aa16.4■□□□□ 0.22
HDAC3-213ENST00000492506 SOX1O00570 391 aaPredicted RBP16.4■□□□□ 0.22
HDAC3-213ENST00000492506 IFIT1P09914 478 aaKnown RBP16.4■□□□□ 0.22
HDAC3-213ENST00000492506 RFX5P48382 616 aaPredicted RBP16.4■□□□□ 0.22
HDAC3-213ENST00000492506 WDR66Q8TBY9 1149 aa16.4■□□□□ 0.22
HDAC3-213ENST00000492506 BIN2Q9UBW5 565 aaPredicted RBP16.4■□□□□ 0.22
HDAC3-213ENST00000492506 A0A0G2JLL6 359 aaPredicted RBP16.39■□□□□ 0.21
HDAC3-213ENST00000492506 A0A1W2PPC1 479 aa16.39■□□□□ 0.21
HDAC3-213ENST00000492506 ADCY3O60266 1144 aa16.39■□□□□ 0.21
HDAC3-213ENST00000492506 PRDX5P30044 214 aa16.39■□□□□ 0.21
HDAC3-213ENST00000492506 PRRT2Q7Z6L0 340 aaPredicted RBP16.39■□□□□ 0.21
HDAC3-213ENST00000492506 EYA2O00167 538 aa16.38■□□□□ 0.21
HDAC3-213ENST00000492506 ELNP15502 786 aa16.38■□□□□ 0.21
HDAC3-213ENST00000492506 FLT3LGP49771 235 aa16.38■□□□□ 0.21
HDAC3-213ENST00000492506 PXYLP1Q8TE99 480 aa16.38■□□□□ 0.21
HDAC3-213ENST00000492506 LPIN2Q92539 896 aa16.38■□□□□ 0.21
HDAC3-213ENST00000492506 USP44Q9H0E7 712 aa16.38■□□□□ 0.21
HDAC3-213ENST00000492506 AFG3L2Q9Y4W6 797 aa16.38■□□□□ 0.21
HDAC3-213ENST00000492506 RFX7Q2KHR2 1363 aa16.38■□□□□ 0.21
HDAC3-213ENST00000492506 DLL1O00548 723 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 INHAP05111 366 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 PTPRAP18433 802 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 MAP3K10Q02779 954 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 IRF5Q13568 498 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 SH3BP5LQ7L8J4 393 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 ATG9AQ7Z3C6 839 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 SCYL3Q8IZE3 742 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 MRPL50Q8N5N7 158 aaKnown RBP16.37■□□□□ 0.21
HDAC3-213ENST00000492506 SLC17A8Q8NDX2 589 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 CRISPLD2Q9H0B8 497 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 MRS2Q9HD23 443 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 PAK6Q9NQU5 681 aaPredicted RBP16.37■□□□□ 0.21
HDAC3-213ENST00000492506 USP40Q9NVE5 1235 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 SLC45A1Q9Y2W3 748 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 ZHX2Q9Y6X8 837 aa16.37■□□□□ 0.21
HDAC3-213ENST00000492506 SLURP2P0DP57 97 aa16.36■□□□□ 0.21
HDAC3-213ENST00000492506 SLC5A1P13866 664 aa16.36■□□□□ 0.21
HDAC3-213ENST00000492506 FASTKD5Q7L8L6 764 aaKnown RBP16.36■□□□□ 0.21
HDAC3-213ENST00000492506 LRCH3Q96II8 777 aa16.36■□□□□ 0.21
HDAC3-213ENST00000492506 DEFB118Q96PH6 123 aa16.36■□□□□ 0.21
HDAC3-213ENST00000492506 IDI2Q9BXS1 227 aa16.36■□□□□ 0.21
HDAC3-213ENST00000492506 PPP4R2Q9NY27 417 aa16.36■□□□□ 0.21
HDAC3-213ENST00000492506 SALL1Q9NSC2 1324 aa16.36■□□□□ 0.21
HDAC3-213ENST00000492506 LOC285556D6RIA3 1793 aa16.36■□□□□ 0.21
HDAC3-213ENST00000492506 PLXNB2O15031 1838 aa16.35■□□□□ 0.21
HDAC3-213ENST00000492506 ATAD5Q96QE3 1844 aa16.35■□□□□ 0.21
HDAC3-213ENST00000492506 EVI5O60447 810 aa16.35■□□□□ 0.21
HDAC3-213ENST00000492506 CAPN2P17655 700 aa16.35■□□□□ 0.21
HDAC3-213ENST00000492506 STAP2Q9UGK3 403 aa16.35■□□□□ 0.21
HDAC3-213ENST00000492506 UNC80Q8N2C7 3258 aa16.35■□□□□ 0.21
HDAC3-213ENST00000492506 ENTPD3O75355 529 aa16.34■□□□□ 0.21
HDAC3-213ENST00000492506 TFRCP02786 760 aaKnown RBP16.34■□□□□ 0.21
HDAC3-213ENST00000492506 LDHBP07195 334 aaKnown RBP16.34■□□□□ 0.21
HDAC3-213ENST00000492506 RGS3P49796 1198 aa16.34■□□□□ 0.21
HDAC3-213ENST00000492506 GADL1Q6ZQY3 521 aa16.34■□□□□ 0.21
HDAC3-213ENST00000492506 PICK1Q9NRD5 415 aa16.34■□□□□ 0.21
HDAC3-213ENST00000492506 GAKO14976 1311 aa16.34■□□□□ 0.21
HDAC3-213ENST00000492506 TNPO2O14787 897 aaKnown RBP16.33■□□□□ 0.2
HDAC3-213ENST00000492506 ZBTB22O15209 634 aa16.33■□□□□ 0.2
HDAC3-213ENST00000492506 PAWRQ96IZ0 340 aaKnown RBP16.33■□□□□ 0.2
HDAC3-213ENST00000492506 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.33■□□□□ 0.2
HDAC3-213ENST00000492506 PTPRCP08575 1304 aa16.33■□□□□ 0.2
HDAC3-213ENST00000492506 DDX60LQ5H9U9 1706 aaKnown RBP16.33■□□□□ 0.2
HDAC3-213ENST00000492506 DDTLA6NHG4 134 aaPredicted RBP16.32■□□□□ 0.2
HDAC3-213ENST00000492506 ANP32CO43423 234 aa16.32■□□□□ 0.2
HDAC3-213ENST00000492506 DIS3LQ8TF46 1054 aaKnown RBP16.32■□□□□ 0.2
HDAC3-213ENST00000492506 ZNF521Q96K83 1311 aa16.32■□□□□ 0.2
HDAC3-213ENST00000492506 GDF15Q99988 308 aa16.32■□□□□ 0.2
HDAC3-213ENST00000492506 CTNND1O60716 968 aaKnown RBP16.31■□□□□ 0.2
HDAC3-213ENST00000492506 BMP8BP34820 402 aa16.31■□□□□ 0.2
HDAC3-213ENST00000492506 PHKA1P46020 1223 aa16.31■□□□□ 0.2
HDAC3-213ENST00000492506 ATP2B3Q16720 1220 aa16.31■□□□□ 0.2
HDAC3-213ENST00000492506 TREML2Q5T2D2 321 aa16.31■□□□□ 0.2
HDAC3-213ENST00000492506 ANKRD13CQ8N6S4 541 aa16.31■□□□□ 0.2
HDAC3-213ENST00000492506 DDX4Q9NQI0 724 aaKnown RBP16.31■□□□□ 0.2
HDAC3-213ENST00000492506 DENND2AQ9ULE3 1009 aa16.31■□□□□ 0.2
HDAC3-213ENST00000492506 AGTPBP1Q9UPW5 1226 aa16.31■□□□□ 0.2
HDAC3-213ENST00000492506 LAMA2P24043 3122 aaKnown RBP16.31■□□□□ 0.2
HDAC3-213ENST00000492506 TRIM75PA6NK02 468 aa16.3■□□□□ 0.2
HDAC3-213ENST00000492506 SEMA3EO15041 775 aa16.3■□□□□ 0.2
HDAC3-213ENST00000492506 CIAO1O76071 339 aa16.3■□□□□ 0.2
HDAC3-213ENST00000492506 MNX1P50219 401 aaPredicted RBP16.3■□□□□ 0.2
HDAC3-213ENST00000492506 CCDC84Q86UT8 332 aaPredicted RBP16.3■□□□□ 0.2
HDAC3-213ENST00000492506 SMCR8Q8TEV9 937 aaPredicted RBP16.3■□□□□ 0.2
HDAC3-213ENST00000492506 FAM163AQ96GL9 167 aaPredicted RBP16.3■□□□□ 0.2
HDAC3-213ENST00000492506 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.3■□□□□ 0.2
HDAC3-213ENST00000492506 GNL3LQ9NVN8 582 aaKnown RBP16.3■□□□□ 0.2
HDAC3-213ENST00000492506 FBXO3Q9UK99 471 aa16.3■□□□□ 0.2
HDAC3-213ENST00000492506 LRRFIP2Q9Y608 721 aaKnown RBP16.3■□□□□ 0.2
HDAC3-213ENST00000492506 DNAH12Q6ZR08 3092 aa16.3■□□□□ 0.2
HDAC3-213ENST00000492506 FAM110CQ1W6H9 321 aa16.29■□□□□ 0.2
HDAC3-213ENST00000492506 NECAB2Q7Z6G3 386 aa16.29■□□□□ 0.2
HDAC3-213ENST00000492506 SSH1Q8WYL5 1049 aa16.29■□□□□ 0.2
HDAC3-213ENST00000492506 COA7Q96BR5 231 aa16.29■□□□□ 0.2
HDAC3-213ENST00000492506 SIL1Q9H173 461 aa16.29■□□□□ 0.2
HDAC3-213ENST00000492506 ADORA1P30542 326 aa16.28■□□□□ 0.2
HDAC3-213ENST00000492506 GPR153Q6NV75 609 aa16.28■□□□□ 0.2
HDAC3-213ENST00000492506 ZSCAN29Q8IWY8 852 aaPredicted RBP16.28■□□□□ 0.2
HDAC3-213ENST00000492506 ANKLE1Q8NAG6 615 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms