RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 FBXW7Q969H0 707 aa11.45□□□□□ -0.58
USP54-214ENST00000492357 IPO9Q96P70 1041 aaKnown RBP11.45□□□□□ -0.58
USP54-214ENST00000492357 DHX36Q9H2U1 1008 aaKnown RBP11.45□□□□□ -0.58
USP54-214ENST00000492357 EPB41L4AQ9HCS5 686 aaPredicted RBP11.45□□□□□ -0.58
USP54-214ENST00000492357 PALD1Q9ULE6 856 aa11.45□□□□□ -0.58
USP54-214ENST00000492357 E7EWF7 191 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 ORC4O43929 436 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 ENTPD3O75355 529 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 USP5P45974 858 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 NEK4P51957 841 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 GRIK5Q16478 980 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 SLFNL1Q499Z3 407 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 CCDC178Q5BJE1 867 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 AKNAD1Q5T1N1 836 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 APOBEC3HQ6NTF7 200 aaKnown RBP11.44□□□□□ -0.58
USP54-214ENST00000492357 ARHGAP27Q6ZUM4 889 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 DHX32Q7L7V1 743 aaKnown RBP11.44□□□□□ -0.58
USP54-214ENST00000492357 RALYLQ86SE5 291 aaKnown RBP11.44□□□□□ -0.58
USP54-214ENST00000492357 TTC6Q86TZ1 520 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 KIAA0825Q8IV33 1275 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 TEX11Q8IYF3 940 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 ZSCAN31Q96LW9 406 aaPredicted RBP11.44□□□□□ -0.58
USP54-214ENST00000492357 AGXT2Q9BYV1 514 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 TMOD2Q9NZR1 351 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 JAG2Q9Y219 1238 aa11.44□□□□□ -0.58
USP54-214ENST00000492357 ATRNL1Q5VV63 1379 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 SPDYE2BA6NHP3 402 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 MYO1BO43795 1136 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 SPDYE6P0CI01 402 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 CASTP20810 708 aaKnown RBP11.43□□□□□ -0.58
USP54-214ENST00000492357 RPS6KB1P23443 525 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 MCM5P33992 734 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 DYNLL1P63167 89 aaKnown RBP11.43□□□□□ -0.58
USP54-214ENST00000492357 PDE4BQ07343 736 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 PPARAQ07869 468 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 MKRN4PQ13434 485 aaPredicted RBP11.43□□□□□ -0.58
USP54-214ENST00000492357 DLGAP5Q15398 846 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 C12orf60Q5U649 245 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 MFSD6Q6ZSS7 791 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 ZBED3Q96IU2 234 aaPredicted RBP11.43□□□□□ -0.58
USP54-214ENST00000492357 TMEM87BQ96K49 555 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 JAKMIP1Q96N16 626 aaKnown RBP11.43□□□□□ -0.58
USP54-214ENST00000492357 TTC14Q96N46 770 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 EHD4Q9H223 541 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 SH2B1Q9NRF2 756 aaPredicted RBP11.43□□□□□ -0.58
USP54-214ENST00000492357 DAXXQ9UER7 740 aaPredicted RBP11.43□□□□□ -0.58
USP54-214ENST00000492357 MYH1P12882 1939 aa11.43□□□□□ -0.58
USP54-214ENST00000492357 FLT1P17948 1338 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 K7ELQ4 463 aaPredicted RBP11.42□□□□□ -0.58
USP54-214ENST00000492357 WDHD1O75717 1129 aaPredicted RBP11.42□□□□□ -0.58
USP54-214ENST00000492357 RAD17O75943 681 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 PDIA4P13667 645 aaKnown RBP11.42□□□□□ -0.58
USP54-214ENST00000492357 RCAN1P53805 252 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 EVCP57679 992 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 RASSF7Q02833 373 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 CFAP100Q494V2 611 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 PPP4R3BQ5MIZ7 849 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 CTR9Q6PD62 1173 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 FAM83AQ86UY5 434 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 TMTC2Q8N394 836 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 SH3RF3Q8TEJ3 882 aaPredicted RBP11.42□□□□□ -0.58
USP54-214ENST00000492357 SDR42E1Q8WUS8 393 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 KCNQ5Q9NR82 932 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 USP40Q9NVE5 1235 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 SWAP70Q9UH65 585 aa11.42□□□□□ -0.58
USP54-214ENST00000492357 ZBTB12Q9Y330 459 aaPredicted RBP11.42□□□□□ -0.58
USP54-214ENST00000492357 USP17L12C9JPN9 530 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 USP17L21D6R901 530 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 PRKAB2O43741 272 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 HLA-DOAP06340 250 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 LIFRP42702 1097 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 EXOSC10Q01780 885 aaKnown RBP11.41□□□□□ -0.58
USP54-214ENST00000492357 TNFAIP1Q13829 316 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 SART3Q15020 963 aaKnown RBP11.41□□□□□ -0.58
USP54-214ENST00000492357 CDC42EP5Q6NZY7 148 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 MB21D2Q8IYB1 491 aaPredicted RBP11.41□□□□□ -0.58
USP54-214ENST00000492357 ESR2Q92731 530 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 INTS4Q96HW7 963 aaKnown RBP11.41□□□□□ -0.58
USP54-214ENST00000492357 PDRG1Q9NUG6 133 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 MCM9Q9NXL9 1143 aa11.41□□□□□ -0.58
USP54-214ENST00000492357 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP54-214ENST00000492357 BAZ2AQ9UIF9 1905 aaKnown RBP11.41□□□□□ -0.58
USP54-214ENST00000492357 F8W031 263 aaPredicted RBP11.4□□□□□ -0.58
USP54-214ENST00000492357 YBX3P16989 372 aaKnown RBP eCLIP11.4□□□□□ -0.58
USP54-214ENST00000492357 TNNI2P48788 182 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 SCNN1DP51172 638 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 ADCK5Q3MIX3 580 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 SPDYE2Q495Y8 402 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 DPY19L2Q6NUT2 758 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 METTL16Q86W50 562 aaKnown RBP11.4□□□□□ -0.58
USP54-214ENST00000492357 FOXP4Q8IVH2 680 aaPredicted RBP11.4□□□□□ -0.58
USP54-214ENST00000492357 TGFBRAP1Q8WUH2 860 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 HOOK2Q96ED9 719 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 L3MBTL3Q96JM7 780 aaPredicted RBP11.4□□□□□ -0.58
USP54-214ENST00000492357 TBC1D2Q9BYX2 928 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 OSBPL5Q9H0X9 879 aaPredicted RBP11.4□□□□□ -0.58
USP54-214ENST00000492357 MYOZ2Q9NPC6 264 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 LIMCH1Q9UPQ0 1083 aa11.4□□□□□ -0.58
USP54-214ENST00000492357 H7C1D1 291 aa11.39□□□□□ -0.59
USP54-214ENST00000492357 POLR3DP05423 398 aaPredicted RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms