RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 PDE1AP54750 535 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 EPSTI1Q96J88 318 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 TAF5LO75529 589 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 OATP04181 439 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 DNAI1Q9UI46 699 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 SYT1P21579 422 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 PRIM1P49642 420 aaKnown RBP14.7□□□□□ -0.06
COL6A3-212ENST00000491769 PUM3Q15397 648 aaKnown RBP14.7□□□□□ -0.06
COL6A3-212ENST00000491769 TEX14Q8IWB6 1497 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 ESYT1Q9BSJ8 1104 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 SYNJ1O43426 1573 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 ITIH3Q06033 890 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 PIK3AP1Q6ZUJ8 805 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 CTNND2Q9UQB3 1225 aa14.7□□□□□ -0.06
COL6A3-212ENST00000491769 WDR66Q8TBY9 1149 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 TBC1D2Q9BYX2 928 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 CSRNP2Q9H175 543 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 SH3TC1Q8TE82 1336 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 CLUL1Q15846 466 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 C4orf50Q6ZRC1 276 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 IQUBQ8NA54 791 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 DNAJC25Q9H1X3 360 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 MAP3K5Q99683 1374 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 B4E1Z4 1266 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 PDE4DQ08499 809 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 C8orf58Q8NAV2 365 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 CCDC89Q8N998 374 aa14.69□□□□□ -0.06
COL6A3-212ENST00000491769 CAVIN2O95810 425 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 MAPKAPK5Q8IW41 473 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 SULF1Q8IWU6 871 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 ANKS4BQ8N8V4 417 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 GTPBP4Q9BZE4 634 aaKnown RBP14.68□□□□□ -0.06
COL6A3-212ENST00000491769 CCDC171Q6TFL3 1326 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 PDE8AO60658 829 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 KARSQ15046 597 aaKnown RBP14.68□□□□□ -0.06
COL6A3-212ENST00000491769 OPA1O60313 960 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 PRDM1O75626 825 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 ARHGEF6Q15052 776 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 FMNL3Q8IVF7 1028 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 MYCT1Q8N699 235 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 NOC4LQ9BVI4 516 aaKnown RBP14.68□□□□□ -0.06
COL6A3-212ENST00000491769 TACC3Q9Y6A5 838 aa14.68□□□□□ -0.06
COL6A3-212ENST00000491769 IPO4Q8TEX9 1081 aaKnown RBP14.68□□□□□ -0.06
COL6A3-212ENST00000491769 YARSP54577 528 aaKnown RBP14.67□□□□□ -0.06
COL6A3-212ENST00000491769 OTUD7BQ6GQQ9 843 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 NCAPG2Q86XI2 1143 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 UBLCP1Q8WVY7 318 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-212ENST00000491769 DACT1Q9NYF0 836 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 ARHGEF16Q5VV41 709 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 DCUN1D2Q6PH85 259 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 STIM2Q9P246 746 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 DNM1Q05193 864 aaKnown RBP14.67□□□□□ -0.06
COL6A3-212ENST00000491769 CASC4Q6P4E1 433 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 SESTD1Q86VW0 696 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 TGFBRAP1Q8WUH2 860 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 ZNF830Q96NB3 372 aaPredicted RBP14.67□□□□□ -0.06
COL6A3-212ENST00000491769 TBC1D7Q9P0N9 293 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 IL16Q14005 1332 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 TCP10L2B9ZVM9 353 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 PLCD1P51178 756 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 ADCY7P51828 1080 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 GPR161Q8N6U8 529 aaKnown RBP14.67□□□□□ -0.06
COL6A3-212ENST00000491769 TIAM1Q13009 1591 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 SKILP12757 684 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 MCM6Q14566 821 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 LZTFL1Q9NQ48 299 aa14.67□□□□□ -0.06
COL6A3-212ENST00000491769 TESPA1A2RU30 521 aaPredicted RBP14.66□□□□□ -0.06
COL6A3-212ENST00000491769 CREB3L3Q68CJ9 461 aa14.66□□□□□ -0.06
COL6A3-212ENST00000491769 FLT4P35916 1363 aa14.66□□□□□ -0.06
COL6A3-212ENST00000491769 TNFAIP1Q13829 316 aa14.66□□□□□ -0.06
COL6A3-212ENST00000491769 NLRX1Q86UT6 975 aa14.66□□□□□ -0.06
COL6A3-212ENST00000491769 RAD51AP2Q09MP3 1159 aa14.66□□□□□ -0.06
COL6A3-212ENST00000491769 USP40Q9NVE5 1235 aa14.66□□□□□ -0.06
COL6A3-212ENST00000491769 LUC7L2Q9Y383 392 aaKnown RBP14.66□□□□□ -0.06
COL6A3-212ENST00000491769 A0A1B0GUL7 405 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 TTC36A6NLP5 189 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 C2CD5Q86YS7 1000 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 DNMBPQ6XZF7 1577 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 XRCC6P12956 609 aaKnown RBP eCLIP14.65□□□□□ -0.06
COL6A3-212ENST00000491769 GTF2IP78347 998 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 PABPC4Q13310 644 aaKnown RBP eCLIP14.65□□□□□ -0.06
COL6A3-212ENST00000491769 AFAP1L2Q8N4X5 818 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 STK25O00506 426 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 ITKQ08881 620 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 ZNF569Q5MCW4 686 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 FAM184BQ9ULE4 1060 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 P4HA1P13674 534 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 TNNC1P63316 161 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 NUCB1Q02818 461 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 ASIC2Q16515 512 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 DHX32Q7L7V1 743 aaKnown RBP14.65□□□□□ -0.06
COL6A3-212ENST00000491769 ZNF594Q96JF6 807 aaPredicted RBP14.65□□□□□ -0.06
COL6A3-212ENST00000491769 TTC41PQ6P2S7 1318 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 GCNT3O95395 438 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 PLCB4Q15147 1175 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 UTP14CQ5TAP6 766 aaKnown RBP14.65□□□□□ -0.06
COL6A3-212ENST00000491769 CNNM4Q6P4Q7 775 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 GLT8D2Q9H1C3 349 aa14.65□□□□□ -0.06
COL6A3-212ENST00000491769 TIMM10P62072 90 aa14.64□□□□□ -0.07
COL6A3-212ENST00000491769 MRPL50Q8N5N7 158 aaKnown RBP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 862.9 ms