RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 DCAF15Q66K64 600 aa9.41□□□□□ -0.9
COL9A1-209ENST00000489861 PRRT2Q7Z6L0 340 aaPredicted RBP9.41□□□□□ -0.9
COL9A1-209ENST00000489861 BADQ92934 168 aa9.41□□□□□ -0.9
COL9A1-209ENST00000489861 KHSRPQ92945 711 aaKnown RBP eCLIP9.41□□□□□ -0.9
COL9A1-209ENST00000489861 ZNF576Q9H609 170 aa9.41□□□□□ -0.9
COL9A1-209ENST00000489861 CFAP54Q96N23 3096 aa9.41□□□□□ -0.9
COL9A1-209ENST00000489861 CACNA1BQ00975 2339 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 DNAJB2P25686 324 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 PPP2R1AP30153 589 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 CCND3P30281 292 aaPredicted RBP9.4□□□□□ -0.9
COL9A1-209ENST00000489861 RTP1P59025 263 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 ADGRE1Q14246 886 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 NOL9Q5SY16 702 aaKnown RBP9.4□□□□□ -0.9
COL9A1-209ENST00000489861 GADL1Q6ZQY3 521 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 ZNF804AQ7Z570 1209 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 FAM83AQ86UY5 434 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 IL27Q8NEV9 243 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 SMCR8Q8TEV9 937 aaPredicted RBP9.4□□□□□ -0.9
COL9A1-209ENST00000489861 PNNQ9H307 717 aaKnown RBP9.4□□□□□ -0.9
COL9A1-209ENST00000489861 PRKAG2Q9UGJ0 569 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 SLC45A1Q9Y2W3 748 aa9.4□□□□□ -0.9
COL9A1-209ENST00000489861 RPAP1Q9BWH6 1393 aaPredicted RBP9.39□□□□□ -0.91
COL9A1-209ENST00000489861 ZNF318Q5VUA4 2279 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 GPR37L1O60883 481 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 CYP2B6P20813 491 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 ITGA6P23229 1130 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 EPHB4P54760 987 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 TFF2Q03403 129 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 CACNB2Q08289 660 aaPredicted RBP9.39□□□□□ -0.91
COL9A1-209ENST00000489861 GOLGA2Q08379 1002 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 FAM110CQ1W6H9 321 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 FASTKD5Q7L8L6 764 aaKnown RBP9.39□□□□□ -0.91
COL9A1-209ENST00000489861 HOOK2Q96ED9 719 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 MPHOSPH8Q99549 860 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 PRDM12Q9H4Q4 367 aa9.39□□□□□ -0.91
COL9A1-209ENST00000489861 GBF1Q92538 1859 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 CHL1O00533 1208 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 IGKV5-2P06315 115 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 KCNQ1P51787 676 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 FKBP1CQ5VVH2 108 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 SH3RF1Q7Z6J0 888 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 TDRD7Q8NHU6 1098 aaKnown RBP9.38□□□□□ -0.91
COL9A1-209ENST00000489861 RNPC3Q96LT9 517 aaKnown RBP9.38□□□□□ -0.91
COL9A1-209ENST00000489861 GAS2L1Q99501 681 aaPredicted RBP9.38□□□□□ -0.91
COL9A1-209ENST00000489861 METTL22Q9BUU2 404 aaPredicted RBP9.38□□□□□ -0.91
COL9A1-209ENST00000489861 ATP11BQ9Y2G3 1177 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 DAGLAQ9Y4D2 1042 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 AFG3L2Q9Y4W6 797 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 ZHX2Q9Y6X8 837 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 USP34Q70CQ2 3546 aa9.38□□□□□ -0.91
COL9A1-209ENST00000489861 DOCK1Q14185 1865 aa9.37□□□□□ -0.91
COL9A1-209ENST00000489861 TRIM43BA6NCK2 446 aa9.37□□□□□ -0.91
COL9A1-209ENST00000489861 ITGB8P26012 769 aa9.37□□□□□ -0.91
COL9A1-209ENST00000489861 RIPK4P57078 832 aa9.37□□□□□ -0.91
COL9A1-209ENST00000489861 TREML2Q5T2D2 321 aa9.37□□□□□ -0.91
COL9A1-209ENST00000489861 APOBEC3HQ6NTF7 200 aaKnown RBP9.37□□□□□ -0.91
COL9A1-209ENST00000489861 TRIM43Q96BQ3 446 aaPredicted RBP9.37□□□□□ -0.91
COL9A1-209ENST00000489861 TIFAQ96CG3 184 aa9.37□□□□□ -0.91
COL9A1-209ENST00000489861 PRDM5Q9NQX1 630 aaPredicted RBP9.37□□□□□ -0.91
COL9A1-209ENST00000489861 CXXC1Q9P0U4 656 aaPredicted RBP9.37□□□□□ -0.91
COL9A1-209ENST00000489861 TRANK1O15050 2925 aa9.37□□□□□ -0.91
COL9A1-209ENST00000489861 PTPRZ1P23471 2315 aaPredicted RBP9.37□□□□□ -0.91
COL9A1-209ENST00000489861 DOCK2Q92608 1830 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 ABCB7O75027 752 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 HOXB7P09629 217 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 PTPRAP18433 802 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 NHLH1Q02575 133 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 CCL14Q16627 93 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 PDLIM7Q9NR12 457 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 LOC285556D6RIA3 1793 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 LRRC37A2A6NM11 1700 aa9.36□□□□□ -0.91
COL9A1-209ENST00000489861 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.35□□□□□ -0.91
COL9A1-209ENST00000489861 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.35□□□□□ -0.91
COL9A1-209ENST00000489861 PHF20L1A8MW92 1017 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 SMIM22K7EJ46 135 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 PEX10O60683 326 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 SLC4A2P04920 1241 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 CSF1RP07333 972 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 XRCC5P13010 732 aaKnown RBP9.35□□□□□ -0.91
COL9A1-209ENST00000489861 PBX2P40425 430 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 GYG1P46976 350 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 HDLBPQ00341 1268 aaKnown RBP9.35□□□□□ -0.91
COL9A1-209ENST00000489861 DUSP27Q5VZP5 1158 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 TEKT1Q969V4 418 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 ZDHHC15Q96MV8 337 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 TMOD2Q9NZR1 351 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.35□□□□□ -0.91
COL9A1-209ENST00000489861 AGTPBP1Q9UPW5 1226 aa9.35□□□□□ -0.91
COL9A1-209ENST00000489861 TRIM75PA6NK02 468 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 H7C1W4 665 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 IGFBP4P22692 258 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 TCP10Q12799 353 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 CWF19L2Q2TBE0 894 aaKnown RBP9.34□□□□□ -0.91
COL9A1-209ENST00000489861 TRIM60Q495X7 471 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 SLC39A5Q6ZMH5 540 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 UBE3BQ7Z3V4 1068 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 CCDC84Q86UT8 332 aaPredicted RBP9.34□□□□□ -0.91
COL9A1-209ENST00000489861 SCYL3Q8IZE3 742 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 FAM151AQ8WW52 585 aa9.34□□□□□ -0.91
COL9A1-209ENST00000489861 USP6NLQ92738 828 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms