RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 MFSD6Q6ZSS7 791 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 ZDHHC15Q96MV8 337 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 SLKQ9H2G2 1235 aaPredicted RBP25.61■■□□□ 1.69
SMC4-221ENST00000489573 MCM9Q9NXL9 1143 aa25.61■■□□□ 1.69
SMC4-221ENST00000489573 WDR19Q8NEZ3 1342 aa25.6■■□□□ 1.69
SMC4-221ENST00000489573 LAMB1P07942 1786 aa25.6■■□□□ 1.69
SMC4-221ENST00000489573 FGD1P98174 961 aa25.6■■□□□ 1.69
SMC4-221ENST00000489573 CUL4AQ13619 759 aa25.6■■□□□ 1.69
SMC4-221ENST00000489573 NAV1Q8NEY1 1877 aa25.6■■□□□ 1.69
SMC4-221ENST00000489573 ZSCAN31Q96LW9 406 aaPredicted RBP25.6■■□□□ 1.69
SMC4-221ENST00000489573 KRT23Q9C075 422 aa25.6■■□□□ 1.69
SMC4-221ENST00000489573 SERPINA10Q9UK55 444 aa25.6■■□□□ 1.69
SMC4-221ENST00000489573 ADAMTSL1Q8N6G6 1762 aa25.59■■□□□ 1.69
SMC4-221ENST00000489573 CYP2D7A0A087X1C5 515 aa25.59■■□□□ 1.69
SMC4-221ENST00000489573 LARP6Q9BRS8 491 aaKnown RBP25.59■■□□□ 1.69
SMC4-221ENST00000489573 SH2B1Q9NRF2 756 aaPredicted RBP25.59■■□□□ 1.69
SMC4-221ENST00000489573 TACC3Q9Y6A5 838 aa25.59■■□□□ 1.69
SMC4-221ENST00000489573 B4E1Z4 1266 aa25.58■■□□□ 1.69
SMC4-221ENST00000489573 PRC1O43663 620 aa25.58■■□□□ 1.69
SMC4-221ENST00000489573 APOBEC3HQ6NTF7 200 aaKnown RBP25.58■■□□□ 1.69
SMC4-221ENST00000489573 MAPKAPK5Q8IW41 473 aa25.58■■□□□ 1.69
SMC4-221ENST00000489573 AMOTL1Q8IY63 956 aa25.58■■□□□ 1.69
SMC4-221ENST00000489573 SYT17Q9BSW7 474 aa25.58■■□□□ 1.69
SMC4-221ENST00000489573 LRRC2Q9BYS8 371 aa25.58■■□□□ 1.69
SMC4-221ENST00000489573 FOXD4L1Q9NU39 408 aa25.58■■□□□ 1.69
SMC4-221ENST00000489573 FLT1P17948 1338 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 USP17L8P0C7I0 530 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 PCP11498 1178 aaKnown RBP25.57■■□□□ 1.68
SMC4-221ENST00000489573 ANTXR2P58335 489 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 CHST3Q7LGC8 479 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 FBXL16Q8N461 479 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 GMLQ99445 158 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 AGXT2Q9BYV1 514 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 TPCN1Q9ULQ1 816 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 CDK5RAP2Q96SN8 1893 aa25.57■■□□□ 1.68
SMC4-221ENST00000489573 SLC3A2P08195 630 aaKnown RBP25.56■■□□□ 1.68
SMC4-221ENST00000489573 CXCL9Q07325 125 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 CIAPIN1Q6FI81 312 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 INCENPQ9NQS7 918 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 USP40Q9NVE5 1235 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 DDX60LQ5H9U9 1706 aaKnown RBP25.56■■□□□ 1.68
SMC4-221ENST00000489573 LARGE1O95461 756 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 CYP2D6P10635 497 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 RBM5P52756 815 aaKnown RBP eCLIP25.56■■□□□ 1.68
SMC4-221ENST00000489573 C12orf60Q5U649 245 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 CDC42EP5Q6NZY7 148 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 AGBL3Q8NEM8 1001 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 BRF1Q92994 677 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 TOMM22Q9NS69 142 aa25.56■■□□□ 1.68
SMC4-221ENST00000489573 FOCADQ5VW36 1801 aa25.55■■□□□ 1.68
SMC4-221ENST00000489573 SMIM22K7EJ46 135 aa25.55■■□□□ 1.68
SMC4-221ENST00000489573 CYB5R4Q7L1T6 521 aa25.55■■□□□ 1.68
SMC4-221ENST00000489573 STK11IPQ8N1F8 1099 aa25.55■■□□□ 1.68
SMC4-221ENST00000489573 INTS4Q96HW7 963 aaKnown RBP25.55■■□□□ 1.68
SMC4-221ENST00000489573 HDAC9Q9UKV0 1011 aa25.55■■□□□ 1.68
SMC4-221ENST00000489573 FGRP09769 529 aa25.54■■□□□ 1.68
SMC4-221ENST00000489573 ME3Q16798 604 aa25.54■■□□□ 1.68
SMC4-221ENST00000489573 RRP12Q5JTH9 1297 aaKnown RBP25.54■■□□□ 1.68
SMC4-221ENST00000489573 ROBO3Q96MS0 1386 aa25.54■■□□□ 1.68
SMC4-221ENST00000489573 KDM4AO75164 1064 aa25.53■■□□□ 1.68
SMC4-221ENST00000489573 WDHD1O75717 1129 aaPredicted RBP25.53■■□□□ 1.68
SMC4-221ENST00000489573 POLR3DP05423 398 aaPredicted RBP25.53■■□□□ 1.68
SMC4-221ENST00000489573 PRELPP51888 382 aa25.53■■□□□ 1.68
SMC4-221ENST00000489573 TNIP1Q15025 636 aa25.53■■□□□ 1.68
SMC4-221ENST00000489573 CFAP100Q494V2 611 aa25.53■■□□□ 1.68
SMC4-221ENST00000489573 NKX2-3Q8TAU0 364 aa25.53■■□□□ 1.68
SMC4-221ENST00000489573 SAP30BPQ9UHR5 308 aaKnown RBP25.53■■□□□ 1.68
SMC4-221ENST00000489573 ZBTB12Q9Y330 459 aaPredicted RBP25.53■■□□□ 1.68
SMC4-221ENST00000489573 UTRNP46939 3433 aa25.53■■□□□ 1.68
SMC4-221ENST00000489573 DDIT3P35638 169 aa25.52■■□□□ 1.68
SMC4-221ENST00000489573 EVX2Q03828 476 aa25.52■■□□□ 1.68
SMC4-221ENST00000489573 ARHGAP27Q6ZUM4 889 aa25.52■■□□□ 1.68
SMC4-221ENST00000489573 ESR2Q92731 530 aa25.52■■□□□ 1.68
SMC4-221ENST00000489573 TMEM87BQ96K49 555 aa25.52■■□□□ 1.68
SMC4-221ENST00000489573 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.52■■□□□ 1.682e-144■■■■■ 553.7
SMC4-221ENST00000489573 PCDHAC2Q9Y5I4 1007 aa25.52■■□□□ 1.68
SMC4-221ENST00000489573 OGFOD1Q8N543 542 aa25.52■■□□□ 1.68
SMC4-221ENST00000489573 CWC22Q9HCG8 908 aaKnown RBP25.52■■□□□ 1.68
SMC4-221ENST00000489573 ZSWIM5Q9P217 1185 aa25.52■■□□□ 1.68
SMC4-221ENST00000489573 ORC4O43929 436 aa25.51■■□□□ 1.67
SMC4-221ENST00000489573 PDE4BQ07343 736 aa25.51■■□□□ 1.67
SMC4-221ENST00000489573 PICALMQ13492 652 aa25.51■■□□□ 1.67
SMC4-221ENST00000489573 SLC4A8Q2Y0W8 1093 aa25.51■■□□□ 1.67
SMC4-221ENST00000489573 ECM29Q5VYK3 1845 aa25.5■■□□□ 1.67
SMC4-221ENST00000489573 FZD9O00144 591 aa25.5■■□□□ 1.67
SMC4-221ENST00000489573 SH2B2O14492 632 aaPredicted RBP25.5■■□□□ 1.67
SMC4-221ENST00000489573 EIF6P56537 245 aaKnown RBP25.5■■□□□ 1.67
SMC4-221ENST00000489573 APOBRQ0VD83 1088 aa25.5■■□□□ 1.67
SMC4-221ENST00000489573 CCDC83Q8IWF9 413 aa25.5■■□□□ 1.67
SMC4-221ENST00000489573 MTA3Q9BTC8 594 aa25.5■■□□□ 1.67
SMC4-221ENST00000489573 DDX4Q9NQI0 724 aaKnown RBP25.5■■□□□ 1.67
SMC4-221ENST00000489573 GPHNQ9NQX3 736 aaPredicted RBP25.5■■□□□ 1.67
SMC4-221ENST00000489573 CHMP5Q9NZZ3 219 aa25.49■■□□□ 1.67
SMC4-221ENST00000489573 CIZ1Q9ULV3 898 aaPredicted RBP25.49■■□□□ 1.67
SMC4-221ENST00000489573 ANGEL1Q9UNK9 670 aaKnown RBP25.49■■□□□ 1.67
SMC4-221ENST00000489573 PRDM1O75626 825 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 RPS12P25398 132 aaKnown RBP25.48■■□□□ 1.67
SMC4-221ENST00000489573 NT5C2P49902 561 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 EVCP57679 992 aa25.48■■□□□ 1.67
SMC4-221ENST00000489573 ST3GAL1Q11201 340 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms