RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SCYL3Q8IZE3 742 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 FAM163AQ96GL9 167 aaPredicted RBP15.37■□□□□ 0.05
CPSF3-204ENST00000489403 XAGE2Q96GT9 111 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 TRIM47Q96LD4 638 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 DDX4Q9NQI0 724 aaKnown RBP15.37■□□□□ 0.05
CPSF3-204ENST00000489403 PHIPQ8WWQ0 1821 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 PTPRFP10586 1907 aa15.37■□□□□ 0.05
CPSF3-204ENST00000489403 DDTLA6NHG4 134 aaPredicted RBP15.36■□□□□ 0.05
CPSF3-204ENST00000489403 CXCL11O14625 94 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 SLURP2P0DP57 97 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 OSBPP22059 807 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 BTDP43251 543 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 PSMC4P43686 418 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 GPAT2Q6NUI2 795 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 SRRDQ9UH36 339 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 AKAP2Q9Y2D5 859 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 MROH7-TTC4A0A0A0MT08 1334 aa15.36■□□□□ 0.05
CPSF3-204ENST00000489403 MGAMO43451 1857 aa15.35■□□□□ 0.05
CPSF3-204ENST00000489403 PTPRAP18433 802 aa15.35■□□□□ 0.05
CPSF3-204ENST00000489403 MAP3K10Q02779 954 aa15.35■□□□□ 0.05
CPSF3-204ENST00000489403 PICALMQ13492 652 aa15.35■□□□□ 0.05
CPSF3-204ENST00000489403 MVPQ14764 893 aaKnown RBP15.35■□□□□ 0.05
CPSF3-204ENST00000489403 ZSCAN29Q8IWY8 852 aaPredicted RBP15.35■□□□□ 0.05
CPSF3-204ENST00000489403 SLF2Q8IX21 1173 aa15.35■□□□□ 0.05
CPSF3-204ENST00000489403 ZNF384Q8TF68 577 aa15.35■□□□□ 0.05
CPSF3-204ENST00000489403 PARK7Q99497 189 aaKnown RBP15.35■□□□□ 0.05
CPSF3-204ENST00000489403 TNNQ9UQP3 1299 aa15.35■□□□□ 0.05
CPSF3-204ENST00000489403 A0A0G2JLL6 359 aaPredicted RBP15.34■□□□□ 0.05
CPSF3-204ENST00000489403 CCER2I3L3R5 266 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 FMNL1O95466 1100 aaPredicted RBP15.34■□□□□ 0.05
CPSF3-204ENST00000489403 CYP2C8P10632 490 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 BCRP11274 1271 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 TRIM27P14373 513 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 RHBDL3P58872 404 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 MECOMQ03112 1051 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 HABP4Q5JVS0 413 aaKnown RBP15.34■□□□□ 0.05
CPSF3-204ENST00000489403 SPTY2D1Q68D10 685 aaPredicted RBP15.34■□□□□ 0.05
CPSF3-204ENST00000489403 ERICH6Q7L0X2 663 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 PRRT2Q7Z6L0 340 aaPredicted RBP15.34■□□□□ 0.05
CPSF3-204ENST00000489403 PICK1Q9NRD5 415 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 AFG3L2Q9Y4W6 797 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 ZHX2Q9Y6X8 837 aa15.34■□□□□ 0.05
CPSF3-204ENST00000489403 GPR75-ASB3A0A0A6YYF3 556 aa15.33■□□□□ 0.04
CPSF3-204ENST00000489403 HOXD10P28358 340 aa15.33■□□□□ 0.04
CPSF3-204ENST00000489403 MTFR1Q15390 333 aa15.33■□□□□ 0.04
CPSF3-204ENST00000489403 PI16Q6UXB8 463 aa15.33■□□□□ 0.04
CPSF3-204ENST00000489403 RAET1EQ8TD07 263 aa15.33■□□□□ 0.04
CPSF3-204ENST00000489403 NEUROD6Q96NK8 337 aa15.33■□□□□ 0.04
CPSF3-204ENST00000489403 HMG20BQ9P0W2 317 aa15.33■□□□□ 0.04
CPSF3-204ENST00000489403 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.33■□□□□ 0.04
CPSF3-204ENST00000489403 MYPNQ86TC9 1320 aa15.33■□□□□ 0.04
CPSF3-204ENST00000489403 PNMA6EA0A0J9YXQ4 647 aa15.32■□□□□ 0.04
CPSF3-204ENST00000489403 GRK4P32298 578 aa15.32■□□□□ 0.04
CPSF3-204ENST00000489403 GADL1Q6ZQY3 521 aa15.32■□□□□ 0.04
CPSF3-204ENST00000489403 FASTKD5Q7L8L6 764 aaKnown RBP15.32■□□□□ 0.04
CPSF3-204ENST00000489403 SHISA4Q96DD7 197 aa15.32■□□□□ 0.04
CPSF3-204ENST00000489403 IPO8O15397 1037 aaKnown RBP15.31■□□□□ 0.04
CPSF3-204ENST00000489403 CTNND1O60716 968 aaKnown RBP15.31■□□□□ 0.04
CPSF3-204ENST00000489403 BCAR3O75815 825 aa15.31■□□□□ 0.04
CPSF3-204ENST00000489403 GNAI2P04899 355 aa15.31■□□□□ 0.04
CPSF3-204ENST00000489403 ARID4AP29374 1257 aaPredicted RBP15.31■□□□□ 0.04
CPSF3-204ENST00000489403 FCGRTP55899 365 aa15.31■□□□□ 0.04
CPSF3-204ENST00000489403 PRKCZQ05513 592 aa15.31■□□□□ 0.04
CPSF3-204ENST00000489403 ATF7IPQ6VMQ6 1270 aa15.31■□□□□ 0.04
CPSF3-204ENST00000489403 CCDC84Q86UT8 332 aaPredicted RBP15.31■□□□□ 0.04
CPSF3-204ENST00000489403 SPATA5Q8NB90 893 aa15.31■□□□□ 0.04
CPSF3-204ENST00000489403 NSUN4Q96CB9 384 aaKnown RBP15.31■□□□□ 0.04
CPSF3-204ENST00000489403 SLC45A1Q9Y2W3 748 aa15.31■□□□□ 0.04
CPSF3-204ENST00000489403 ATAD5Q96QE3 1844 aa15.31■□□□□ 0.04
CPSF3-204ENST00000489403 FAM196BA6NMK8 535 aa15.3■□□□□ 0.04
CPSF3-204ENST00000489403 TBC1D12O60347 775 aa15.3■□□□□ 0.04
CPSF3-204ENST00000489403 NPM3O75607 178 aaKnown RBP15.3■□□□□ 0.04
CPSF3-204ENST00000489403 COL2A1P02458 1487 aaPredicted RBP15.3■□□□□ 0.04
CPSF3-204ENST00000489403 MCAMP43121 646 aa15.3■□□□□ 0.04
CPSF3-204ENST00000489403 TBC1D9Q6ZT07 1266 aa15.3■□□□□ 0.04
CPSF3-204ENST00000489403 FRAT1Q92837 279 aaPredicted RBP15.3■□□□□ 0.04
CPSF3-204ENST00000489403 CLUAP1Q96AJ1 413 aa15.3■□□□□ 0.04
CPSF3-204ENST00000489403 GABRQQ9UN88 632 aa15.3■□□□□ 0.04
CPSF3-204ENST00000489403 LOC285556D6RIA3 1793 aa15.29■□□□□ 0.04
CPSF3-204ENST00000489403 MAST2Q6P0Q8 1798 aa15.29■□□□□ 0.04
CPSF3-204ENST00000489403 TRIM75PA6NK02 468 aa15.29■□□□□ 0.04
CPSF3-204ENST00000489403 GSTO1P78417 241 aa15.29■□□□□ 0.04
CPSF3-204ENST00000489403 GORABQ5T7V8 394 aa15.29■□□□□ 0.04
CPSF3-204ENST00000489403 OSBPL5Q9H0X9 879 aaPredicted RBP15.29■□□□□ 0.04
CPSF3-204ENST00000489403 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.29■□□□□ 0.04
CPSF3-204ENST00000489403 LDHCP07864 332 aa15.28■□□□□ 0.04
CPSF3-204ENST00000489403 CCL5P13501 91 aa15.28■□□□□ 0.04
CPSF3-204ENST00000489403 GJA8P48165 433 aa15.28■□□□□ 0.04
CPSF3-204ENST00000489403 G3BP1Q13283 466 aaKnown RBP eCLIP15.28■□□□□ 0.04
CPSF3-204ENST00000489403 RAI14Q9P0K7 980 aa15.28■□□□□ 0.04
CPSF3-204ENST00000489403 AGTPBP1Q9UPW5 1226 aa15.28■□□□□ 0.04
CPSF3-204ENST00000489403 SIPA1L1O43166 1804 aa15.28■□□□□ 0.04
CPSF3-204ENST00000489403 MAP4K4O95819 1239 aaPredicted RBP15.27■□□□□ 0.04
CPSF3-204ENST00000489403 UBXN2AP68543 259 aa15.27■□□□□ 0.04
CPSF3-204ENST00000489403 TREML2Q5T2D2 321 aa15.27■□□□□ 0.04
CPSF3-204ENST00000489403 TMEM57Q8N5G2 664 aa15.27■□□□□ 0.04
CPSF3-204ENST00000489403 SLAIN1Q8ND83 568 aa15.27■□□□□ 0.04
CPSF3-204ENST00000489403 NKX2-3Q8TAU0 364 aa15.27■□□□□ 0.04
CPSF3-204ENST00000489403 SMCR8Q8TEV9 937 aaPredicted RBP15.27■□□□□ 0.04
CPSF3-204ENST00000489403 COLQQ9Y215 455 aaPredicted RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms