RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 DDTLA6NHG4 134 aaPredicted RBP25.86■■□□□ 1.73
LIME1-207ENST00000489212 TBC1D8O95759 1140 aa25.86■■□□□ 1.73
LIME1-207ENST00000489212 INPP5BP32019 993 aa25.86■■□□□ 1.73
LIME1-207ENST00000489212 BCL11AQ9H165 835 aa25.86■■□□□ 1.73
LIME1-207ENST00000489212 ANTXR1Q9H6X2 564 aa25.86■■□□□ 1.73
LIME1-207ENST00000489212 ZNF112Q9UJU3 913 aa25.86■■□□□ 1.73
LIME1-207ENST00000489212 IGF2BP3O00425 579 aaKnown RBP eCLIP25.85■■□□□ 1.73
LIME1-207ENST00000489212 SLURP2P0DP57 97 aa25.85■■□□□ 1.73
LIME1-207ENST00000489212 IFNL1Q8IU54 200 aa25.85■■□□□ 1.73
LIME1-207ENST00000489212 IFIT2P09913 472 aaKnown RBP25.84■■□□□ 1.73
LIME1-207ENST00000489212 INHBEP58166 350 aa25.84■■□□□ 1.73
LIME1-207ENST00000489212 SH3RF3Q8TEJ3 882 aaPredicted RBP25.84■■□□□ 1.73
LIME1-207ENST00000489212 OTUD5Q96G74 571 aa25.84■■□□□ 1.73
LIME1-207ENST00000489212 MS4A4AQ96JQ5 239 aa25.84■■□□□ 1.73
LIME1-207ENST00000489212 R3HDMLQ9H3Y0 253 aa25.84■■□□□ 1.73
LIME1-207ENST00000489212 AATFQ9NY61 560 aaKnown RBP eCLIP25.84■■□□□ 1.73
LIME1-207ENST00000489212 SPDYE5A6NIY4 337 aa25.83■■□□□ 1.73
LIME1-207ENST00000489212 NPM3O75607 178 aaKnown RBP25.83■■□□□ 1.73
LIME1-207ENST00000489212 MAP4K4O95819 1239 aaPredicted RBP25.83■■□□□ 1.73
LIME1-207ENST00000489212 ZSCAN29Q8IWY8 852 aaPredicted RBP25.83■■□□□ 1.73
LIME1-207ENST00000489212 PTPN18Q99952 460 aa25.83■■□□□ 1.73
LIME1-207ENST00000489212 TESPA1A2RU30 521 aaPredicted RBP25.82■■□□□ 1.72
LIME1-207ENST00000489212 IGSF3O75054 1194 aa25.82■■□□□ 1.72
LIME1-207ENST00000489212 IDH1O75874 414 aaKnown RBP25.82■■□□□ 1.72
LIME1-207ENST00000489212 PPP4CP60510 307 aa25.82■■□□□ 1.72
LIME1-207ENST00000489212 ERO1BQ86YB8 467 aa25.82■■□□□ 1.72
LIME1-207ENST00000489212 TEX11Q8IYF3 940 aa25.82■■□□□ 1.72
LIME1-207ENST00000489212 PCDHB15Q9Y5E8 787 aa25.82■■□□□ 1.72
LIME1-207ENST00000489212 SMARCA5O60264 1052 aaPredicted RBP25.81■■□□□ 1.72
LIME1-207ENST00000489212 MAP3K10Q02779 954 aa25.81■■□□□ 1.72
LIME1-207ENST00000489212 CFHR5Q9BXR6 569 aa25.81■■□□□ 1.72
LIME1-207ENST00000489212 PHF20L1A8MW92 1017 aa25.8■■□□□ 1.72
LIME1-207ENST00000489212 CYP7A1P22680 504 aa25.8■■□□□ 1.72
LIME1-207ENST00000489212 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.8■■□□□ 1.72
LIME1-207ENST00000489212 BRI3BPQ8WY22 251 aa25.8■■□□□ 1.72
LIME1-207ENST00000489212 CRBNQ96SW2 442 aa25.8■■□□□ 1.72
LIME1-207ENST00000489212 NOL10Q9BSC4 688 aaKnown RBP25.8■■□□□ 1.72
LIME1-207ENST00000489212 LRRCC1Q9C099 1032 aa25.8■■□□□ 1.72
LIME1-207ENST00000489212 OSBPL5Q9H0X9 879 aaPredicted RBP25.8■■□□□ 1.72
LIME1-207ENST00000489212 DCTPP1Q9H773 170 aa25.8■■□□□ 1.72
LIME1-207ENST00000489212 CDK5RAP2Q96SN8 1893 aa25.8■■□□□ 1.72
LIME1-207ENST00000489212 CAPN15O75808 1086 aa25.79■■□□□ 1.72
LIME1-207ENST00000489212 BAG3O95817 575 aa25.79■■□□□ 1.72
LIME1-207ENST00000489212 ALDH1A1P00352 501 aa25.79■■□□□ 1.72
LIME1-207ENST00000489212 MAGEB6Q8N7X4 407 aa25.79■■□□□ 1.72
LIME1-207ENST00000489212 GPR25O00155 361 aa25.78■■□□□ 1.72
LIME1-207ENST00000489212 IRF6O14896 467 aa25.78■■□□□ 1.72
LIME1-207ENST00000489212 GTF2A2P52657 109 aa25.78■■□□□ 1.72
LIME1-207ENST00000489212 DYNLL1P63167 89 aaKnown RBP25.78■■□□□ 1.72
LIME1-207ENST00000489212 PPIL2Q13356 520 aa25.78■■□□□ 1.72
LIME1-207ENST00000489212 NOL9Q5SY16 702 aaKnown RBP25.78■■□□□ 1.72
LIME1-207ENST00000489212 ZNF296Q8WUU4 475 aaPredicted RBP25.78■■□□□ 1.72
LIME1-207ENST00000489212 COL2A1P02458 1487 aaPredicted RBP25.78■■□□□ 1.72
LIME1-207ENST00000489212 CCL15-CCL14A0A0B4J2E2 113 aa25.77■■□□□ 1.72
LIME1-207ENST00000489212 PLCG2P16885 1265 aa25.77■■□□□ 1.72
LIME1-207ENST00000489212 CCL15Q16663 113 aa25.77■■□□□ 1.72
LIME1-207ENST00000489212 MCOLN1Q9GZU1 580 aa25.77■■□□□ 1.72
LIME1-207ENST00000489212 FOCADQ5VW36 1801 aa25.77■■□□□ 1.72
LIME1-207ENST00000489212 PPATQ06203 517 aa25.76■■□□□ 1.71
LIME1-207ENST00000489212 MAP3K12Q12852 859 aa25.76■■□□□ 1.71
LIME1-207ENST00000489212 NOM1Q5C9Z4 860 aaKnown RBP25.76■■□□□ 1.71
LIME1-207ENST00000489212 MIGA1Q8NAN2 632 aa25.76■■□□□ 1.71
LIME1-207ENST00000489212 TGFBRAP1Q8WUH2 860 aa25.76■■□□□ 1.71
LIME1-207ENST00000489212 EDC3Q96F86 508 aaKnown RBP25.76■■□□□ 1.71
LIME1-207ENST00000489212 ABHD8Q96I13 439 aa25.76■■□□□ 1.71
LIME1-207ENST00000489212 DNAJC2Q99543 621 aaKnown RBP25.76■■□□□ 1.71
LIME1-207ENST00000489212 FAM196BA6NMK8 535 aa25.75■■□□□ 1.71
LIME1-207ENST00000489212 GOLIM4O00461 696 aa25.75■■□□□ 1.71
LIME1-207ENST00000489212 DGKZQ13574 1117 aa25.75■■□□□ 1.71
LIME1-207ENST00000489212 MAPKAPK5Q8IW41 473 aa25.75■■□□□ 1.71
LIME1-207ENST00000489212 BOLA2Q9H3K6 86 aa25.75■■□□□ 1.71
LIME1-207ENST00000489212 FLT1P17948 1338 aa25.74■■□□□ 1.71
LIME1-207ENST00000489212 TBC1D12O60347 775 aa25.74■■□□□ 1.71
LIME1-207ENST00000489212 ATP5JP18859 108 aa25.74■■□□□ 1.71
LIME1-207ENST00000489212 CRHR2Q13324 411 aa25.74■■□□□ 1.71
LIME1-207ENST00000489212 TTF1Q15361 905 aaPredicted RBP25.74■■□□□ 1.71
LIME1-207ENST00000489212 OTUD7BQ6GQQ9 843 aa25.74■■□□□ 1.71
LIME1-207ENST00000489212 FAM43AQ8N2R8 423 aa25.74■■□□□ 1.71
LIME1-207ENST00000489212 SIPA1L1O43166 1804 aa25.74■■□□□ 1.71
LIME1-207ENST00000489212 SNAPC2Q13487 334 aa25.73■■□□□ 1.71
LIME1-207ENST00000489212 SCYL3Q8IZE3 742 aa25.73■■□□□ 1.71
LIME1-207ENST00000489212 CETPP11597 493 aa25.72■■□□□ 1.71
LIME1-207ENST00000489212 PDE6AP16499 860 aa25.72■■□□□ 1.71
LIME1-207ENST00000489212 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.72■■□□□ 1.71
LIME1-207ENST00000489212 KCNH4Q9UQ05 1017 aa25.72■■□□□ 1.71
LIME1-207ENST00000489212 DOCK1Q14185 1865 aa25.71■■□□□ 1.71
LIME1-207ENST00000489212 SLC9C2Q5TAH2 1124 aa25.71■■□□□ 1.71
LIME1-207ENST00000489212 TMED8Q6PL24 325 aaPredicted RBP25.71■■□□□ 1.71
LIME1-207ENST00000489212 CTU1Q7Z7A3 348 aaKnown RBP25.71■■□□□ 1.71
LIME1-207ENST00000489212 HAUS7Q99871 368 aa25.71■■□□□ 1.71
LIME1-207ENST00000489212 PAG1Q9NWQ8 432 aa25.71■■□□□ 1.71
LIME1-207ENST00000489212 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.71■■□□□ 1.71
LIME1-207ENST00000489212 BTBD19C9JJ37 291 aa25.7■■□□□ 1.7
LIME1-207ENST00000489212 CTNND1O60716 968 aaKnown RBP25.7■■□□□ 1.7
LIME1-207ENST00000489212 FKTNO75072 461 aa25.7■■□□□ 1.7
LIME1-207ENST00000489212 PTPRAP18433 802 aa25.7■■□□□ 1.7
LIME1-207ENST00000489212 RRP1BQ14684 758 aaKnown RBP25.7■■□□□ 1.7
LIME1-207ENST00000489212 RIOK1Q9BRS2 568 aaKnown RBP25.7■■□□□ 1.7
LIME1-207ENST00000489212 DHX36Q9H2U1 1008 aaKnown RBP25.7■■□□□ 1.7
LIME1-207ENST00000489212 TCRBV5S4A2TA0A5A2 114 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms