RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 PUM3Q15397 648 aaKnown RBP20.32■□□□□ 0.84
USP48-210ENST00000489108 PRRT2Q7Z6L0 340 aaPredicted RBP20.32■□□□□ 0.84
USP48-210ENST00000489108 TAOK2Q9UL54 1235 aa20.32■□□□□ 0.84
USP48-210ENST00000489108 KIF16BQ96L93 1317 aa20.31■□□□□ 0.84
USP48-210ENST00000489108 PTPRAP18433 802 aa20.31■□□□□ 0.84
USP48-210ENST00000489108 ZEB1P37275 1124 aaPredicted RBP20.31■□□□□ 0.84
USP48-210ENST00000489108 MNX1P50219 401 aaPredicted RBP20.31■□□□□ 0.84
USP48-210ENST00000489108 SCYL3Q8IZE3 742 aa20.31■□□□□ 0.84
USP48-210ENST00000489108 DIS3LQ8TF46 1054 aaKnown RBP20.31■□□□□ 0.84
USP48-210ENST00000489108 GDF15Q99988 308 aa20.31■□□□□ 0.84
USP48-210ENST00000489108 PICK1Q9NRD5 415 aa20.31■□□□□ 0.84
USP48-210ENST00000489108 AFG3L2Q9Y4W6 797 aa20.31■□□□□ 0.84
USP48-210ENST00000489108 MYH13Q9UKX3 1938 aa20.31■□□□□ 0.84
USP48-210ENST00000489108 PRDX5P30044 214 aa20.3■□□□□ 0.84
USP48-210ENST00000489108 BMP8BP34820 402 aa20.3■□□□□ 0.84
USP48-210ENST00000489108 NECAB2Q7Z6G3 386 aa20.3■□□□□ 0.84
USP48-210ENST00000489108 C7orf61Q8IZ16 206 aa20.29■□□□□ 0.84
USP48-210ENST00000489108 DEFB123Q8N688 67 aa20.29■□□□□ 0.84
USP48-210ENST00000489108 SMCR8Q8TEV9 937 aaPredicted RBP20.29■□□□□ 0.84
USP48-210ENST00000489108 ZMYND8Q9ULU4 1186 aaPredicted RBP20.29■□□□□ 0.84
USP48-210ENST00000489108 SLC45A1Q9Y2W3 748 aa20.29■□□□□ 0.84
USP48-210ENST00000489108 SLURP2P0DP57 97 aa20.28■□□□□ 0.84
USP48-210ENST00000489108 SLC5A1P13866 664 aa20.28■□□□□ 0.84
USP48-210ENST00000489108 Q7L0L9 218 aa20.28■□□□□ 0.84
USP48-210ENST00000489108 LPIN2Q92539 896 aa20.28■□□□□ 0.84
USP48-210ENST00000489108 COA7Q96BR5 231 aa20.28■□□□□ 0.84
USP48-210ENST00000489108 ATRNL1Q5VV63 1379 aa20.28■□□□□ 0.84
USP48-210ENST00000489108 CUL9Q8IWT3 2517 aa20.28■□□□□ 0.84
USP48-210ENST00000489108 LDHBP07195 334 aaKnown RBP20.27■□□□□ 0.84
USP48-210ENST00000489108 RGS3P49796 1198 aa20.27■□□□□ 0.84
USP48-210ENST00000489108 GPR153Q6NV75 609 aa20.27■□□□□ 0.84
USP48-210ENST00000489108 SH3BP5LQ7L8J4 393 aa20.27■□□□□ 0.84
USP48-210ENST00000489108 ANKRD13CQ8N6S4 541 aa20.27■□□□□ 0.84
USP48-210ENST00000489108 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.27■□□□□ 0.84
USP48-210ENST00000489108 PTPRFP10586 1907 aa20.27■□□□□ 0.84
USP48-210ENST00000489108 TRIM75PA6NK02 468 aa20.26■□□□□ 0.83
USP48-210ENST00000489108 LRRFIP2Q9Y608 721 aaKnown RBP20.26■□□□□ 0.83
USP48-210ENST00000489108 EYA2O00167 538 aa20.25■□□□□ 0.83
USP48-210ENST00000489108 MAP3K10Q02779 954 aa20.25■□□□□ 0.83
USP48-210ENST00000489108 CCDC84Q86UT8 332 aaPredicted RBP20.25■□□□□ 0.83
USP48-210ENST00000489108 ZSCAN29Q8IWY8 852 aaPredicted RBP20.25■□□□□ 0.83
USP48-210ENST00000489108 IDI2Q9BXS1 227 aa20.25■□□□□ 0.83
USP48-210ENST00000489108 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.25■□□□□ 0.83
USP48-210ENST00000489108 PHIPQ8WWQ0 1821 aa20.25■□□□□ 0.83
USP48-210ENST00000489108 DOCK2Q92608 1830 aa20.25■□□□□ 0.83
USP48-210ENST00000489108 ENTPD3O75355 529 aa20.24■□□□□ 0.83
USP48-210ENST00000489108 SYN1P17600 705 aa20.24■□□□□ 0.83
USP48-210ENST00000489108 RFX5P48382 616 aaPredicted RBP20.24■□□□□ 0.83
USP48-210ENST00000489108 ANKLE1Q8NAG6 615 aa20.24■□□□□ 0.83
USP48-210ENST00000489108 AGTPBP1Q9UPW5 1226 aa20.24■□□□□ 0.83
USP48-210ENST00000489108 STXBP5LQ9Y2K9 1186 aa20.24■□□□□ 0.83
USP48-210ENST00000489108 DDTLA6NHG4 134 aaPredicted RBP20.23■□□□□ 0.83
USP48-210ENST00000489108 CTNND1O60716 968 aaKnown RBP20.23■□□□□ 0.83
USP48-210ENST00000489108 TREML2Q5T2D2 321 aa20.23■□□□□ 0.83
USP48-210ENST00000489108 USP44Q9H0E7 712 aa20.23■□□□□ 0.83
USP48-210ENST00000489108 MTMR10Q9NXD2 777 aa20.23■□□□□ 0.83
USP48-210ENST00000489108 MYH2Q9UKX2 1941 aa20.23■□□□□ 0.83
USP48-210ENST00000489108 MAGEA10P43363 369 aaPredicted RBP20.22■□□□□ 0.83
USP48-210ENST00000489108 TRIM32Q13049 653 aa20.22■□□□□ 0.83
USP48-210ENST00000489108 FAM110CQ1W6H9 321 aa20.22■□□□□ 0.83
USP48-210ENST00000489108 LRIT3Q3SXY7 679 aa20.22■□□□□ 0.83
USP48-210ENST00000489108 ATG9AQ7Z3C6 839 aa20.22■□□□□ 0.83
USP48-210ENST00000489108 NBPF3Q9H094 633 aa20.22■□□□□ 0.83
USP48-210ENST00000489108 GNL3LQ9NVN8 582 aaKnown RBP20.22■□□□□ 0.83
USP48-210ENST00000489108 HMGCRP04035 888 aa20.21■□□□□ 0.83
USP48-210ENST00000489108 HMX1Q9NP08 348 aaPredicted RBP20.21■□□□□ 0.83
USP48-210ENST00000489108 DDX4Q9NQI0 724 aaKnown RBP20.21■□□□□ 0.83
USP48-210ENST00000489108 GJD2Q9UKL4 321 aa20.21■□□□□ 0.83
USP48-210ENST00000489108 DOCK1Q14185 1865 aa20.21■□□□□ 0.83
USP48-210ENST00000489108 RPTORQ8N122 1335 aa20.21■□□□□ 0.83
USP48-210ENST00000489108 SALL1Q9NSC2 1324 aa20.21■□□□□ 0.83
USP48-210ENST00000489108 TDHQ8IZJ6 230 aa20.2■□□□□ 0.82
USP48-210ENST00000489108 PNMA3Q9UL41 463 aa20.2■□□□□ 0.82
USP48-210ENST00000489108 DENND2AQ9ULE3 1009 aa20.2■□□□□ 0.82
USP48-210ENST00000489108 PHKA1P46020 1223 aa20.19■□□□□ 0.82
USP48-210ENST00000489108 PICALMQ13492 652 aa20.19■□□□□ 0.82
USP48-210ENST00000489108 ATP2B3Q16720 1220 aa20.19■□□□□ 0.82
USP48-210ENST00000489108 MRPL50Q8N5N7 158 aaKnown RBP20.19■□□□□ 0.82
USP48-210ENST00000489108 C11orf49Q9H6J7 331 aa20.19■□□□□ 0.82
USP48-210ENST00000489108 MRS2Q9HD23 443 aa20.19■□□□□ 0.82
USP48-210ENST00000489108 GAKO14976 1311 aa20.19■□□□□ 0.82
USP48-210ENST00000489108 SPP2Q13103 211 aa20.18■□□□□ 0.82
USP48-210ENST00000489108 UBE2OQ9C0C9 1292 aaKnown RBP20.18■□□□□ 0.82
USP48-210ENST00000489108 SIL1Q9H173 461 aa20.18■□□□□ 0.82
USP48-210ENST00000489108 CEP126Q9P2H0 1117 aa20.18■□□□□ 0.82
USP48-210ENST00000489108 DDX60LQ5H9U9 1706 aaKnown RBP20.18■□□□□ 0.82
USP48-210ENST00000489108 RFX7Q2KHR2 1363 aa20.18■□□□□ 0.82
USP48-210ENST00000489108 SEMA3EO15041 775 aa20.17■□□□□ 0.82
USP48-210ENST00000489108 GCLCP48506 637 aaPredicted RBP20.17■□□□□ 0.82
USP48-210ENST00000489108 PROCA1Q8NCQ7 364 aaPredicted RBP20.17■□□□□ 0.82
USP48-210ENST00000489108 COL25A1Q9BXS0 654 aaPredicted RBP20.17■□□□□ 0.82
USP48-210ENST00000489108 OGDHLQ9ULD0 1010 aa20.17■□□□□ 0.82
USP48-210ENST00000489108 FAM196BA6NMK8 535 aa20.16■□□□□ 0.82
USP48-210ENST00000489108 DZIP1Q86YF9 867 aaKnown RBP20.16■□□□□ 0.82
USP48-210ENST00000489108 FAM163AQ96GL9 167 aaPredicted RBP20.16■□□□□ 0.82
USP48-210ENST00000489108 UNC80Q8N2C7 3258 aa20.16■□□□□ 0.82
USP48-210ENST00000489108 TBC1D12O60347 775 aa20.15■□□□□ 0.82
USP48-210ENST00000489108 BTDP43251 543 aa20.15■□□□□ 0.82
USP48-210ENST00000489108 ZGPATQ8N5A5 531 aaKnown RBP20.15■□□□□ 0.82
USP48-210ENST00000489108 TRIB2Q92519 343 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms