RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 MCOLN1Q9GZU1 580 aa11.12□□□□□ -0.63
HDAC6-232ENST00000489053 TLR7Q9NYK1 1049 aaKnown RBP11.12□□□□□ -0.63
HDAC6-232ENST00000489053 FAM198AQ9UFP1 575 aa11.12□□□□□ -0.63
HDAC6-232ENST00000489053 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.12□□□□□ -0.63
HDAC6-232ENST00000489053 ECM29Q5VYK3 1845 aa11.12□□□□□ -0.63
HDAC6-232ENST00000489053 MYH13Q9UKX3 1938 aa11.11□□□□□ -0.63
HDAC6-232ENST00000489053 SPDYE5A6NIY4 337 aa11.11□□□□□ -0.63
HDAC6-232ENST00000489053 GPR25O00155 361 aa11.11□□□□□ -0.63
HDAC6-232ENST00000489053 ZAP70P43403 619 aa11.11□□□□□ -0.63
HDAC6-232ENST00000489053 ARHGEF6Q15052 776 aa11.11□□□□□ -0.63
HDAC6-232ENST00000489053 TTF1Q15361 905 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-232ENST00000489053 TAF1CQ15572 869 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-232ENST00000489053 CERS3Q8IU89 383 aa11.11□□□□□ -0.63
HDAC6-232ENST00000489053 ZNF296Q8WUU4 475 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-232ENST00000489053 GPATCH3Q96I76 525 aa11.11□□□□□ -0.63
HDAC6-232ENST00000489053 AATFQ9NY61 560 aaKnown RBP eCLIP11.11□□□□□ -0.63
HDAC6-232ENST00000489053 CYP7A1P22680 504 aa11.1□□□□□ -0.63
HDAC6-232ENST00000489053 INPP5BP32019 993 aa11.1□□□□□ -0.63
HDAC6-232ENST00000489053 PPATQ06203 517 aa11.1□□□□□ -0.63
HDAC6-232ENST00000489053 PPIL2Q13356 520 aa11.1□□□□□ -0.63
HDAC6-232ENST00000489053 C20orf194Q5TEA3 1177 aa11.1□□□□□ -0.63
HDAC6-232ENST00000489053 CRACR2BQ8N4Y2 399 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-232ENST00000489053 CNKSR2Q8WXI2 1034 aa11.1□□□□□ -0.63
HDAC6-232ENST00000489053 DNAJC2Q99543 621 aaKnown RBP11.1□□□□□ -0.63
HDAC6-232ENST00000489053 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.1□□□□□ -0.63
HDAC6-232ENST00000489053 ZFYVE28Q9HCC9 887 aa11.1□□□□□ -0.63
HDAC6-232ENST00000489053 SNCAIPQ9Y6H5 919 aa11.1□□□□□ -0.63
HDAC6-232ENST00000489053 IGF2BP3O00425 579 aaKnown RBP eCLIP11.09□□□□□ -0.63
HDAC6-232ENST00000489053 CYP2E1P05181 493 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-232ENST00000489053 HLA-DOAP06340 250 aa11.09□□□□□ -0.63
HDAC6-232ENST00000489053 GJA5P36382 358 aa11.09□□□□□ -0.63
HDAC6-232ENST00000489053 USP5P45974 858 aa11.09□□□□□ -0.63
HDAC6-232ENST00000489053 KIF22Q14807 665 aa11.09□□□□□ -0.63
HDAC6-232ENST00000489053 PKN2Q16513 984 aaKnown RBP11.09□□□□□ -0.63
HDAC6-232ENST00000489053 TMED8Q6PL24 325 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-232ENST00000489053 ZFPM1Q8IX07 1006 aa11.09□□□□□ -0.63
HDAC6-232ENST00000489053 MAGEB6Q8N7X4 407 aa11.09□□□□□ -0.63
HDAC6-232ENST00000489053 SH3RF3Q8TEJ3 882 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-232ENST00000489053 ERO1AQ96HE7 468 aa11.09□□□□□ -0.63
HDAC6-232ENST00000489053 LRRCC1Q9C099 1032 aa11.09□□□□□ -0.63
HDAC6-232ENST00000489053 IRF6O14896 467 aa11.08□□□□□ -0.64
HDAC6-232ENST00000489053 NPM3O75607 178 aaKnown RBP11.08□□□□□ -0.64
HDAC6-232ENST00000489053 CRHR2Q13324 411 aa11.08□□□□□ -0.64
HDAC6-232ENST00000489053 NOM1Q5C9Z4 860 aaKnown RBP11.08□□□□□ -0.64
HDAC6-232ENST00000489053 MAPKAPK5Q8IW41 473 aa11.08□□□□□ -0.64
HDAC6-232ENST00000489053 SCYL3Q8IZE3 742 aa11.08□□□□□ -0.64
HDAC6-232ENST00000489053 BRI3BPQ8WY22 251 aa11.08□□□□□ -0.64
HDAC6-232ENST00000489053 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.08□□□□□ -0.644e-7■■■■■ 29.1
HDAC6-232ENST00000489053 OSBPL5Q9H0X9 879 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-232ENST00000489053 DHX36Q9H2U1 1008 aaKnown RBP11.08□□□□□ -0.64
HDAC6-232ENST00000489053 DDX4Q9NQI0 724 aaKnown RBP11.08□□□□□ -0.64
HDAC6-232ENST00000489053 PIH1D3Q9NQM4 214 aaKnown RBP11.08□□□□□ -0.64
HDAC6-232ENST00000489053 AKAP11Q9UKA4 1901 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 DDTLA6NHG4 134 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-232ENST00000489053 GOLIM4O00461 696 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 CTNND1O60716 968 aaKnown RBP11.07□□□□□ -0.64
HDAC6-232ENST00000489053 RRP1P56182 461 aaKnown RBP11.07□□□□□ -0.64
HDAC6-232ENST00000489053 RHBDL3P58872 404 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 NOL9Q5SY16 702 aaKnown RBP11.07□□□□□ -0.64
HDAC6-232ENST00000489053 MIGA1Q8NAN2 632 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 TGFBRAP1Q8WUH2 860 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 CFHR5Q9BXR6 569 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 PI4KBQ9UBF8 816 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 HERC5Q9UII4 1024 aaKnown RBP11.07□□□□□ -0.64
HDAC6-232ENST00000489053 NDUFB9Q9Y6M9 179 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 ZHX2Q9Y6X8 837 aa11.07□□□□□ -0.64
HDAC6-232ENST00000489053 MAGEB6P1A0A0J9YX57 407 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 TESPA1A2RU30 521 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-232ENST00000489053 PPP4CP60510 307 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 SP3Q02447 781 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 SLC9C2Q5TAH2 1124 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 GADL1Q6ZQY3 521 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 FASTKD5Q7L8L6 764 aaKnown RBP11.06□□□□□ -0.64
HDAC6-232ENST00000489053 SIRT2Q8IXJ6 389 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 AMOTL1Q8IY63 956 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.06□□□□□ -0.64
HDAC6-232ENST00000489053 DDRGK1Q96HY6 314 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 MS4A4AQ96JQ5 239 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 PARK7Q99497 189 aaKnown RBP11.06□□□□□ -0.64
HDAC6-232ENST00000489053 ZCCHC17Q9NP64 241 aaKnown RBP11.06□□□□□ -0.64
HDAC6-232ENST00000489053 SAP30BPQ9UHR5 308 aaKnown RBP11.06□□□□□ -0.64
HDAC6-232ENST00000489053 ZNF112Q9UJU3 913 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 TRIM17Q9Y577 477 aa11.06□□□□□ -0.64
HDAC6-232ENST00000489053 ATRNL1Q5VV63 1379 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 TRIM75PA6NK02 468 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 BTBD19C9JJ37 291 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 CXCL11O14625 94 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 TBC1D12O60347 775 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 ZSCAN25Q6NSZ9 544 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 FAM43AQ8N2R8 423 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 ZNF384Q8TF68 577 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 PTPN18Q99952 460 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 CRNKL1Q9BZJ0 848 aaKnown RBP11.05□□□□□ -0.64
HDAC6-232ENST00000489053 EFCC1Q9HA90 598 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 AS3MTQ9HBK9 375 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 PAG1Q9NWQ8 432 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 FLT1P17948 1338 aa11.05□□□□□ -0.64
HDAC6-232ENST00000489053 RFX7Q2KHR2 1363 aa11.04□□□□□ -0.64
HDAC6-232ENST00000489053 AK9Q5TCS8 1911 aa11.04□□□□□ -0.64
HDAC6-232ENST00000489053 MYH2Q9UKX2 1941 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms