RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 RGS19P49795 217 aa28.25■■■□□ 2.11
COL9A3-213ENST00000489045 RHBDL3P58872 404 aa28.25■■■□□ 2.11
COL9A3-213ENST00000489045 ZSCAN29Q8IWY8 852 aaPredicted RBP28.25■■■□□ 2.11
COL9A3-213ENST00000489045 FAM43AQ8N2R8 423 aa28.25■■■□□ 2.11
COL9A3-213ENST00000489045 DOCK1Q14185 1865 aa28.24■■■□□ 2.11
COL9A3-213ENST00000489045 PPATQ06203 517 aa28.24■■■□□ 2.11
COL9A3-213ENST00000489045 SNAPC2Q13487 334 aa28.24■■■□□ 2.11
COL9A3-213ENST00000489045 TAF1CQ15572 869 aaPredicted RBP28.24■■■□□ 2.11
COL9A3-213ENST00000489045 FBXO46Q6PJ61 603 aaPredicted RBP28.24■■■□□ 2.11
COL9A3-213ENST00000489045 LRP2BPQ9P2M1 347 aa28.24■■■□□ 2.11
COL9A3-213ENST00000489045 NOL9Q5SY16 702 aaKnown RBP28.23■■■□□ 2.11
COL9A3-213ENST00000489045 TLR7Q9NYK1 1049 aaKnown RBP28.23■■■□□ 2.11
COL9A3-213ENST00000489045 DBNLQ9UJU6 430 aaKnown RBP28.23■■■□□ 2.11
COL9A3-213ENST00000489045 CDK5RAP2Q96SN8 1893 aa28.23■■■□□ 2.11
COL9A3-213ENST00000489045 DDTLA6NHG4 134 aaPredicted RBP28.22■■■□□ 2.11
COL9A3-213ENST00000489045 CD99L2Q8TCZ2 262 aa28.22■■■□□ 2.11
COL9A3-213ENST00000489045 ERO1AQ96HE7 468 aa28.22■■■□□ 2.11
COL9A3-213ENST00000489045 CCDC8Q9H0W5 538 aaPredicted RBP28.22■■■□□ 2.11
COL9A3-213ENST00000489045 RCAN3Q9UKA8 241 aa28.22■■■□□ 2.11
COL9A3-213ENST00000489045 EXOC6BQ9Y2D4 811 aa28.22■■■□□ 2.11
COL9A3-213ENST00000489045 SOX10P56693 466 aa28.21■■■□□ 2.11
COL9A3-213ENST00000489045 EAF2Q96CJ1 260 aaPredicted RBP28.21■■■□□ 2.11
COL9A3-213ENST00000489045 ZNF512BQ96KM6 892 aaPredicted RBP28.21■■■□□ 2.11
COL9A3-213ENST00000489045 ZFYVE28Q9HCC9 887 aa28.21■■■□□ 2.11
COL9A3-213ENST00000489045 COG6Q9Y2V7 657 aa28.21■■■□□ 2.11
COL9A3-213ENST00000489045 TRIM17Q9Y577 477 aa28.21■■■□□ 2.11
COL9A3-213ENST00000489045 PHF20L1A8MW92 1017 aa28.2■■■□□ 2.1
COL9A3-213ENST00000489045 BTBD19C9JJ37 291 aa28.2■■■□□ 2.1
COL9A3-213ENST00000489045 CYP2E1P05181 493 aaPredicted RBP28.2■■■□□ 2.1
COL9A3-213ENST00000489045 SP3Q02447 781 aa28.2■■■□□ 2.1
COL9A3-213ENST00000489045 MLLT1Q03111 559 aaPredicted RBP28.2■■■□□ 2.1
COL9A3-213ENST00000489045 OTOP1Q7RTM1 612 aa28.2■■■□□ 2.1
COL9A3-213ENST00000489045 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.2■■■□□ 2.1
COL9A3-213ENST00000489045 FOCADQ5VW36 1801 aa28.2■■■□□ 2.1
COL9A3-213ENST00000489045 MAP4K4O95819 1239 aaPredicted RBP28.19■■■□□ 2.1
COL9A3-213ENST00000489045 SLURP2P0DP57 97 aa28.19■■■□□ 2.1
COL9A3-213ENST00000489045 DDX19BQ9UMR2 479 aa28.19■■■□□ 2.1
COL9A3-213ENST00000489045 KCNH4Q9UQ05 1017 aa28.19■■■□□ 2.1
COL9A3-213ENST00000489045 PHIPQ8WWQ0 1821 aa28.19■■■□□ 2.1
COL9A3-213ENST00000489045 NPM3O75607 178 aaKnown RBP28.18■■■□□ 2.1
COL9A3-213ENST00000489045 ZAP70P43403 619 aa28.18■■■□□ 2.1
COL9A3-213ENST00000489045 MAP3K10Q02779 954 aa28.18■■■□□ 2.1
COL9A3-213ENST00000489045 NAA16Q6N069 864 aaPredicted RBP28.18■■■□□ 2.1
COL9A3-213ENST00000489045 ERC1Q8IUD2 1116 aa28.18■■■□□ 2.1
COL9A3-213ENST00000489045 ZCCHC17Q9NP64 241 aaKnown RBP28.18■■■□□ 2.1
COL9A3-213ENST00000489045 COL2A1P02458 1487 aaPredicted RBP28.18■■■□□ 2.1
COL9A3-213ENST00000489045 PTPRFP10586 1907 aa28.18■■■□□ 2.1
COL9A3-213ENST00000489045 ATAD5Q96QE3 1844 aa28.18■■■□□ 2.1
COL9A3-213ENST00000489045 SCYL3Q8IZE3 742 aa28.17■■■□□ 2.1
COL9A3-213ENST00000489045 NOL10Q9BSC4 688 aaKnown RBP28.17■■■□□ 2.1
COL9A3-213ENST00000489045 ZSWIM8A7E2V4 1837 aa28.16■■■□□ 2.1
COL9A3-213ENST00000489045 TEX11Q8IYF3 940 aa28.16■■■□□ 2.1
COL9A3-213ENST00000489045 CAP1Q01518 475 aa28.15■■■□□ 2.1
COL9A3-213ENST00000489045 AACSQ86V21 672 aa28.15■■■□□ 2.1
COL9A3-213ENST00000489045 SH3RF3Q8TEJ3 882 aaPredicted RBP28.15■■■□□ 2.1
COL9A3-213ENST00000489045 OSBPL5Q9H0X9 879 aaPredicted RBP28.15■■■□□ 2.1
COL9A3-213ENST00000489045 EFCC1Q9HA90 598 aa28.15■■■□□ 2.1
COL9A3-213ENST00000489045 PIH1D3Q9NQM4 214 aaKnown RBP28.15■■■□□ 2.1
COL9A3-213ENST00000489045 ZBTB40Q9NUA8 1239 aa28.15■■■□□ 2.1
COL9A3-213ENST00000489045 AATFQ9NY61 560 aaKnown RBP eCLIP28.15■■■□□ 2.1
COL9A3-213ENST00000489045 SIPA1L1O43166 1804 aa28.15■■■□□ 2.1
COL9A3-213ENST00000489045 HSP90AB4PQ58FF6 505 aa28.14■■■□□ 2.1
COL9A3-213ENST00000489045 RPAP2Q8IXW5 612 aaPredicted RBP28.14■■■□□ 2.1
COL9A3-213ENST00000489045 PICK1Q9NRD5 415 aa28.14■■■□□ 2.1
COL9A3-213ENST00000489045 HTTP42858 3142 aa28.14■■■□□ 2.09
COL9A3-213ENST00000489045 TLR2O60603 784 aa28.13■■■□□ 2.09
COL9A3-213ENST00000489045 ANKRD23Q86SG2 305 aa28.13■■■□□ 2.09
COL9A3-213ENST00000489045 ADGRA1Q86SQ6 560 aa28.13■■■□□ 2.09
COL9A3-213ENST00000489045 FAM196BA6NMK8 535 aa28.12■■■□□ 2.09
COL9A3-213ENST00000489045 CTNND1O60716 968 aaKnown RBP28.12■■■□□ 2.09
COL9A3-213ENST00000489045 BAG3O95817 575 aa28.12■■■□□ 2.09
COL9A3-213ENST00000489045 PTPRAP18433 802 aa28.12■■■□□ 2.09
COL9A3-213ENST00000489045 MOGSQ13724 837 aa28.12■■■□□ 2.09
COL9A3-213ENST00000489045 RHPN1Q8TCX5 695 aa28.12■■■□□ 2.09
COL9A3-213ENST00000489045 IL1RAPL2Q9NP60 686 aa28.12■■■□□ 2.09
COL9A3-213ENST00000489045 PTPN22Q9Y2R2 807 aa28.12■■■□□ 2.09
COL9A3-213ENST00000489045 ZHX2Q9Y6X8 837 aa28.12■■■□□ 2.09
COL9A3-213ENST00000489045 CXCL11O14625 94 aa28.11■■■□□ 2.09
COL9A3-213ENST00000489045 TNRC18O15417 2968 aaPredicted RBP28.11■■■□□ 2.09
COL9A3-213ENST00000489045 TBC1D12O60347 775 aa28.11■■■□□ 2.09
COL9A3-213ENST00000489045 PLCG2P16885 1265 aa28.11■■■□□ 2.09
COL9A3-213ENST00000489045 SIRT2Q8IXJ6 389 aa28.11■■■□□ 2.09
COL9A3-213ENST00000489045 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.11■■■□□ 2.09
COL9A3-213ENST00000489045 NDUFB9Q9Y6M9 179 aa28.11■■■□□ 2.09
COL9A3-213ENST00000489045 APBB1O00213 710 aa28.1■■■□□ 2.09
COL9A3-213ENST00000489045 PDHXO00330 501 aa28.1■■■□□ 2.09
COL9A3-213ENST00000489045 IGSF3O75054 1194 aa28.1■■■□□ 2.09
COL9A3-213ENST00000489045 HMMRO75330 724 aa28.1■■■□□ 2.09
COL9A3-213ENST00000489045 PPP4CP60510 307 aa28.1■■■□□ 2.09
COL9A3-213ENST00000489045 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.1■■■□□ 2.09
COL9A3-213ENST00000489045 IDH1O75874 414 aaKnown RBP28.09■■■□□ 2.09
COL9A3-213ENST00000489045 C20orf194Q5TEA3 1177 aa28.09■■■□□ 2.09
COL9A3-213ENST00000489045 CHMP4BQ9H444 224 aaKnown RBP28.09■■■□□ 2.09
COL9A3-213ENST00000489045 AFG3L2Q9Y4W6 797 aa28.09■■■□□ 2.09
COL9A3-213ENST00000489045 MYH1P12882 1939 aa28.08■■■□□ 2.09
COL9A3-213ENST00000489045 A0A0G2JLL6 359 aaPredicted RBP28.07■■■□□ 2.08
COL9A3-213ENST00000489045 CYP7A1P22680 504 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 ARHGEF6Q15052 776 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 GPAT2Q6NUI2 795 aa28.07■■■□□ 2.08
COL9A3-213ENST00000489045 PRRT2Q7Z6L0 340 aaPredicted RBP28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms