RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 SUGT1Q9Y2Z0 365 aa11.7□□□□□ -0.54
COL17A1-207ENST00000488320 F6X3S4 739 aa11.69□□□□□ -0.54
COL17A1-207ENST00000488320 HMGCRP04035 888 aa11.69□□□□□ -0.54
COL17A1-207ENST00000488320 MDM2Q00987 491 aaPredicted RBP11.69□□□□□ -0.54
COL17A1-207ENST00000488320 METTL24Q5JXM2 366 aa11.69□□□□□ -0.54
COL17A1-207ENST00000488320 GUCD1Q96NT3 240 aa11.69□□□□□ -0.54
COL17A1-207ENST00000488320 SLC45A1Q9Y2W3 748 aa11.69□□□□□ -0.54
COL17A1-207ENST00000488320 LRRFIP2Q9Y608 721 aaKnown RBP11.69□□□□□ -0.54
COL17A1-207ENST00000488320 POTEB2H3BUK9 544 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 GRM8O00222 908 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 PTPRAP18433 802 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 BEND3Q5T5X7 828 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 FAM109BQ6ICB4 259 aaPredicted RBP11.68□□□□□ -0.54
COL17A1-207ENST00000488320 CDC42EP5Q6NZY7 148 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 SCYL3Q8IZE3 742 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 USP40Q9NVE5 1235 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 PNMA3Q9UL41 463 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 AFG3L2Q9Y4W6 797 aa11.68□□□□□ -0.54
COL17A1-207ENST00000488320 DDX60LQ5H9U9 1706 aaKnown RBP11.67□□□□□ -0.54
COL17A1-207ENST00000488320 TRIM75PA6NK02 468 aa11.67□□□□□ -0.54
COL17A1-207ENST00000488320 NFIAQ12857 509 aa11.67□□□□□ -0.54
COL17A1-207ENST00000488320 TRIM32Q13049 653 aa11.67□□□□□ -0.54
COL17A1-207ENST00000488320 ZNF697Q5TEC3 545 aa11.67□□□□□ -0.54
COL17A1-207ENST00000488320 ZSCAN29Q8IWY8 852 aaPredicted RBP11.67□□□□□ -0.54
COL17A1-207ENST00000488320 LBHD1Q9BQE6 289 aaPredicted RBP11.67□□□□□ -0.54
COL17A1-207ENST00000488320 OGDHLQ9ULD0 1010 aa11.67□□□□□ -0.54
COL17A1-207ENST00000488320 CACNA1FO60840 1977 aa11.67□□□□□ -0.54
COL17A1-207ENST00000488320 IFIT1P09914 478 aaKnown RBP11.66□□□□□ -0.54
COL17A1-207ENST00000488320 C1QBPQ07021 282 aaKnown RBP11.66□□□□□ -0.54
COL17A1-207ENST00000488320 ZFPM1Q8IX07 1006 aa11.66□□□□□ -0.54
COL17A1-207ENST00000488320 WDR66Q8TBY9 1149 aa11.66□□□□□ -0.54
COL17A1-207ENST00000488320 SYMPKQ92797 1274 aaKnown RBP11.66□□□□□ -0.54
COL17A1-207ENST00000488320 PHF20L1A8MW92 1017 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 PDE8BO95263 885 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 CYP2B6P20813 491 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 DDX10Q13206 875 aaKnown RBP11.65□□□□□ -0.54
COL17A1-207ENST00000488320 DIXDC1Q155Q3 683 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 FAM110CQ1W6H9 321 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 LRRC24Q50LG9 513 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 SLC4A10Q6U841 1118 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 MAFAQ8NHW3 353 aaPredicted RBP11.65□□□□□ -0.54
COL17A1-207ENST00000488320 FAM198AQ9UFP1 575 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 AGTPBP1Q9UPW5 1226 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 DAGLAQ9Y4D2 1042 aa11.65□□□□□ -0.54
COL17A1-207ENST00000488320 CTNND1O60716 968 aaKnown RBP11.64□□□□□ -0.55
COL17A1-207ENST00000488320 COL9A1P20849 921 aa11.64□□□□□ -0.55
COL17A1-207ENST00000488320 GCLCP48506 637 aaPredicted RBP11.64□□□□□ -0.55
COL17A1-207ENST00000488320 PABPC4Q13310 644 aaKnown RBP eCLIP11.64□□□□□ -0.55
COL17A1-207ENST00000488320 TREML2Q5T2D2 321 aa11.64□□□□□ -0.55
COL17A1-207ENST00000488320 SUCLG2Q96I99 432 aa11.64□□□□□ -0.55
COL17A1-207ENST00000488320 CDX2Q99626 313 aaPredicted RBP11.64□□□□□ -0.55
COL17A1-207ENST00000488320 SPINK5Q9NQ38 1064 aaPredicted RBP11.64□□□□□ -0.55
COL17A1-207ENST00000488320 GJD2Q9UKL4 321 aa11.64□□□□□ -0.55
COL17A1-207ENST00000488320 VCANP13611 3396 aa11.64□□□□□ -0.55
COL17A1-207ENST00000488320 PFASO15067 1338 aa11.63□□□□□ -0.55
COL17A1-207ENST00000488320 LDHBP07195 334 aaKnown RBP11.63□□□□□ -0.55
COL17A1-207ENST00000488320 PRKAR2AP13861 404 aaKnown RBP11.63□□□□□ -0.55
COL17A1-207ENST00000488320 RGS3P49796 1198 aa11.63□□□□□ -0.55
COL17A1-207ENST00000488320 LRRC26Q2I0M4 334 aa11.63□□□□□ -0.55
COL17A1-207ENST00000488320 SRCIN1Q9C0H9 1055 aa11.63□□□□□ -0.55
COL17A1-207ENST00000488320 PRKAG2Q9UGJ0 569 aa11.63□□□□□ -0.55
COL17A1-207ENST00000488320 PTPRFP10586 1907 aa11.62□□□□□ -0.55
COL17A1-207ENST00000488320 MYH13Q9UKX3 1938 aa11.62□□□□□ -0.55
COL17A1-207ENST00000488320 VAMP4O75379 141 aa11.62□□□□□ -0.55
COL17A1-207ENST00000488320 ALDH1L1O75891 902 aa11.62□□□□□ -0.55
COL17A1-207ENST00000488320 PUM3Q15397 648 aaKnown RBP11.62□□□□□ -0.55
COL17A1-207ENST00000488320 CCDC84Q86UT8 332 aaPredicted RBP11.62□□□□□ -0.55
COL17A1-207ENST00000488320 PROCA1Q8NCQ7 364 aaPredicted RBP11.62□□□□□ -0.55
COL17A1-207ENST00000488320 TRIB2Q92519 343 aa11.62□□□□□ -0.55
COL17A1-207ENST00000488320 NUDT12Q9BQG2 462 aa11.62□□□□□ -0.55
COL17A1-207ENST00000488320 SEMA6BQ9H3T3 888 aa11.62□□□□□ -0.55
COL17A1-207ENST00000488320 SPTBN5Q9NRC6 3674 aaKnown RBP11.61□□□□□ -0.55
COL17A1-207ENST00000488320 DOCK2Q92608 1830 aa11.61□□□□□ -0.55
COL17A1-207ENST00000488320 ENTPD3O75355 529 aa11.61□□□□□ -0.55
COL17A1-207ENST00000488320 SLURP2P0DP57 97 aa11.61□□□□□ -0.55
COL17A1-207ENST00000488320 SLC5A1P13866 664 aa11.61□□□□□ -0.55
COL17A1-207ENST00000488320 PRDX5P30044 214 aa11.61□□□□□ -0.55
COL17A1-207ENST00000488320 SPP2Q13103 211 aa11.61□□□□□ -0.55
COL17A1-207ENST00000488320 WWC1Q8IX03 1113 aa11.61□□□□□ -0.55
COL17A1-207ENST00000488320 CCAR1Q8IX12 1150 aaKnown RBP11.61□□□□□ -0.55
COL17A1-207ENST00000488320 VGLL2Q8N8G2 317 aa11.61□□□□□ -0.55
COL17A1-207ENST00000488320 SENP6Q9GZR1 1112 aaPredicted RBP11.61□□□□□ -0.55
COL17A1-207ENST00000488320 BICC1Q9H694 974 aaKnown RBP11.61□□□□□ -0.55
COL17A1-207ENST00000488320 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.61□□□□□ -0.55
COL17A1-207ENST00000488320 DDTLA6NHG4 134 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-207ENST00000488320 COL6A1P12109 1028 aa11.6□□□□□ -0.55
COL17A1-207ENST00000488320 ZKSCAN1P17029 563 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-207ENST00000488320 CACNB2Q08289 660 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-207ENST00000488320 PICALMQ13492 652 aa11.6□□□□□ -0.55
COL17A1-207ENST00000488320 PDE3AQ14432 1141 aa11.6□□□□□ -0.55
COL17A1-207ENST00000488320 TRMT44Q8IYL2 757 aaKnown RBP11.6□□□□□ -0.55
COL17A1-207ENST00000488320 KLHDC4Q8TBB5 520 aa11.6□□□□□ -0.55
COL17A1-207ENST00000488320 MYLIPQ8WY64 445 aa11.6□□□□□ -0.55
COL17A1-207ENST00000488320 KAZALD1Q96I82 304 aa11.6□□□□□ -0.55
COL17A1-207ENST00000488320 IDI2Q9BXS1 227 aa11.6□□□□□ -0.55
COL17A1-207ENST00000488320 ASCC2Q9H1I8 757 aaPredicted RBP11.6□□□□□ -0.55
COL17A1-207ENST00000488320 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.6□□□□□ -0.55
COL17A1-207ENST00000488320 CWC22Q9HCG8 908 aaKnown RBP11.6□□□□□ -0.55
COL17A1-207ENST00000488320 GNL3LQ9NVN8 582 aaKnown RBP11.6□□□□□ -0.55
COL17A1-207ENST00000488320 PHIPQ8WWQ0 1821 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms