RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 MYOZ2Q9NPC6 264 aa12.56□□□□□ -0.4
HLA-DMB-261ENST00000487996 DCP1AQ9NPI6 582 aaPredicted RBP12.56□□□□□ -0.4
HLA-DMB-261ENST00000487996 USP40Q9NVE5 1235 aa12.56□□□□□ -0.4
HLA-DMB-261ENST00000487996 FOCADQ5VW36 1801 aa12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 ECM29Q5VYK3 1845 aa12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 CYP21A2P08686 494 aa12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 HMGB1P09429 215 aaKnown RBP12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 PCP11498 1178 aaKnown RBP12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 LMOD1P29536 600 aaPredicted RBP12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 MICALL2Q8IY33 904 aa12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 REM2Q8IYK8 340 aaPredicted RBP12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 TGFBRAP1Q8WUH2 860 aa12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 RNF41Q9H4P4 317 aaPredicted RBP12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 CNOT7Q9UIV1 285 aaKnown RBP12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 NAV1Q8NEY1 1877 aa12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 CDK5RAP2Q96SN8 1893 aa12.55□□□□□ -0.4
HLA-DMB-261ENST00000487996 NT5C2P49902 561 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 TRDNQ13061 729 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 SBK1Q52WX2 424 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 IDI2Q9BXS1 227 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 TM6SF1Q9BZW5 370 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 MCM9Q9NXL9 1143 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 GPRC5DQ9NZD1 345 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 RBM19Q9Y4C8 960 aaKnown RBP12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 SNX14Q9Y5W7 946 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 BAZ2AQ9UIF9 1905 aaKnown RBP12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 FLT1P17948 1338 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 FKBP1CQ5VVH2 108 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 CNNM2Q9H8M5 875 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 ZNF287Q9HBT7 754 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 MKRN1Q9UHC7 482 aaKnown RBP12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 ANAPC4Q9UJX5 808 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 TAOK2Q9UL54 1235 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 ADAMTSL1Q8N6G6 1762 aa12.54□□□□□ -0.4
HLA-DMB-261ENST00000487996 LAMB1P07942 1786 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 USP17L12C9JPN9 530 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 USP17L21D6R901 530 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 ST18O60284 1047 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 ENTPD3O75355 529 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 WDHD1O75717 1129 aaPredicted RBP12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 POLR3DP05423 398 aaPredicted RBP12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 PPARAQ07869 468 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 TTC6Q86TZ1 520 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 MAPKAPK5Q8IW41 473 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 PRMT6Q96LA8 375 aaPredicted RBP12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 DHX36Q9H2U1 1008 aaKnown RBP12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 PALD1Q9ULE6 856 aa12.53□□□□□ -0.4
HLA-DMB-261ENST00000487996 MYH1P12882 1939 aa12.52□□□□□ -0.4
HLA-DMB-261ENST00000487996 MINDY4BA8MYZ0 360 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 WNT10BO00744 389 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 HLA-DOAP06340 250 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 HAND2P61296 217 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 PICALMQ13492 652 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 TNFAIP1Q13829 316 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 KIF4BQ2VIQ3 1234 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 SPDYE2Q495Y8 402 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 CTR9Q6PD62 1173 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 RALYLQ86SE5 291 aaKnown RBP12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 RASEFQ8IZ41 740 aa12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 ZBED3Q96IU2 234 aaPredicted RBP12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 L3MBTL3Q96JM7 780 aaPredicted RBP12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 JAKMIP1Q96N16 626 aaKnown RBP12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 TDRD3Q9H7E2 651 aaKnown RBP12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 COL2A1P02458 1487 aaPredicted RBP12.52□□□□□ -0.41
HLA-DMB-261ENST00000487996 GLTPD2A6NH11 291 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 DDNO94850 711 aaPredicted RBP12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 TNNI2P48788 182 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 PDE4BQ07343 736 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 AKNAD1Q5T1N1 836 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 BLOC1S2Q6QNY1 142 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 MFSD6Q6ZSS7 791 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 NCOA7Q8NI08 942 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 STAG1Q8WVM7 1258 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 NEK1Q96PY6 1258 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 KIF2CQ99661 725 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 KRT23Q9C075 422 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 OSBPL5Q9H0X9 879 aaPredicted RBP12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 ZNF70Q9UC06 446 aaPredicted RBP12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 CYP46A1Q9Y6A2 500 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 DDX60LQ5H9U9 1706 aaKnown RBP12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 ROBO3Q96MS0 1386 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 IQCA1LA6NCM1 817 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 E7EWF7 191 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 CASTP20810 708 aaKnown RBP12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 C12orf60Q5U649 245 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 FAM83AQ86UY5 434 aa12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 ADARB2Q9NS39 739 aaKnown RBP12.51□□□□□ -0.41
HLA-DMB-261ENST00000487996 NEK4P51957 841 aa12.5□□□□□ -0.41
HLA-DMB-261ENST00000487996 RUFY3Q7L099 469 aa12.5□□□□□ -0.41
HLA-DMB-261ENST00000487996 ZSWIM6Q9HCJ5 1215 aa12.5□□□□□ -0.41
HLA-DMB-261ENST00000487996 PCDHAC2Q9Y5I4 1007 aa12.5□□□□□ -0.41
HLA-DMB-261ENST00000487996 MCM2P49736 904 aa12.49□□□□□ -0.41
HLA-DMB-261ENST00000487996 NFIAQ12857 509 aa12.49□□□□□ -0.41
HLA-DMB-261ENST00000487996 BECN1Q14457 450 aa12.49□□□□□ -0.41
HLA-DMB-261ENST00000487996 TBC1D10BQ4KMP7 808 aaPredicted RBP12.49□□□□□ -0.41
HLA-DMB-261ENST00000487996 RBM26Q5T8P6 1007 aaKnown RBP12.49□□□□□ -0.41
HLA-DMB-261ENST00000487996 SAMD7Q7Z3H4 446 aa12.49□□□□□ -0.41
HLA-DMB-261ENST00000487996 APOBEC3FQ8IUX4 373 aaKnown RBP12.49□□□□□ -0.41
HLA-DMB-261ENST00000487996 ZSCAN29Q8IWY8 852 aaPredicted RBP12.49□□□□□ -0.41
HLA-DMB-261ENST00000487996 VEZTQ9HBM0 779 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms