RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PPP6R2O75170 966 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 SSRP1Q08945 709 aaKnown RBP20.74■□□□□ 0.91
VIM-206ENST00000487938 NYAP1Q6ZVC0 841 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 CCDC82Q8N4S0 544 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 MPHOSPH8Q99549 860 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 HPSEQ9Y251 543 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 NUP98P52948 1817 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 GSG1L2A8MUP6 293 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 U2AF2P26368 475 aaKnown RBP eCLIP20.74■□□□□ 0.91
VIM-206ENST00000487938 GUCY1A2P33402 732 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 IL6STP40189 918 aaPredicted RBP20.74■□□□□ 0.91
VIM-206ENST00000487938 BCAMP50895 628 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 TPM4P67936 248 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 ARMCX5Q6P1M9 558 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 SGMS1Q86VZ5 419 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 IMPACTQ9P2X3 320 aa20.74■□□□□ 0.91
VIM-206ENST00000487938 LRP6O75581 1613 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 EXOC5O00471 708 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 ATP1A3P13637 1013 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 SPECC1Q5M775 1068 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 JMYQ8N9B5 988 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 TIGD1Q96MW7 591 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 DISP2A7MBM2 1401 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 LIFRP42702 1097 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 AKNAD1Q5T1N1 836 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 MFSD6Q6ZSS7 791 aa20.73■□□□□ 0.91
VIM-206ENST00000487938 CMTR1Q8N1G2 835 aaKnown RBP20.73■□□□□ 0.91
VIM-206ENST00000487938 FANCCQ00597 558 aa20.72■□□□□ 0.91
VIM-206ENST00000487938 LONRF3Q496Y0 759 aa20.72■□□□□ 0.91
VIM-206ENST00000487938 RESP18Q5W5W9 173 aa20.72■□□□□ 0.91
VIM-206ENST00000487938 LCORLQ8N3X6 602 aa20.72■□□□□ 0.91
VIM-206ENST00000487938 KCNJ14Q9UNX9 436 aa20.72■□□□□ 0.91
VIM-206ENST00000487938 BTBD18B2RXH4 712 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 MIGA1Q8NAN2 632 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 HSD3B7Q9H2F3 369 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 TUBE1Q9UJT0 475 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 SLC4A4Q9Y6R1 1079 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 TDO2P48775 406 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 RGS22Q8NE09 1264 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 ANKRD36CQ5JPF3 1778 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 SLIT2O94813 1529 aa20.71■□□□□ 0.91
VIM-206ENST00000487938 FMNL1O95466 1100 aaPredicted RBP20.7■□□□□ 0.9
VIM-206ENST00000487938 FOXP4Q8IVH2 680 aaPredicted RBP20.7■□□□□ 0.9
VIM-206ENST00000487938 COL14A1Q05707 1796 aaKnown RBP20.7■□□□□ 0.9
VIM-206ENST00000487938 E4F1Q66K89 784 aaPredicted RBP20.7■□□□□ 0.9
VIM-206ENST00000487938 METTL16Q86W50 562 aaKnown RBP20.7■□□□□ 0.9
VIM-206ENST00000487938 IQSEC3Q9UPP2 1182 aaPredicted RBP20.7■□□□□ 0.9
VIM-206ENST00000487938 FOXN1O15353 648 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 CUTAO60888 179 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 SFPQP23246 707 aaKnown RBP eCLIP20.69■□□□□ 0.9
VIM-206ENST00000487938 CNNM3Q8NE01 707 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 DPF2Q92785 391 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 KRT23Q9C075 422 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 CNNM2Q9H8M5 875 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.69■□□□□ 0.9
VIM-206ENST00000487938 KCNH3Q9ULD8 1083 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 IKBKBO14920 756 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 PTPN21Q16825 1174 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 NOSTRINQ8IVI9 506 aa20.69■□□□□ 0.9
VIM-206ENST00000487938 UTP14AQ9BVJ6 771 aaKnown RBP20.69■□□□□ 0.9
VIM-206ENST00000487938 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.69■□□□□ 0.9
VIM-206ENST00000487938 V9GYY5 206 aaPredicted RBP20.69■□□□□ 0.9
VIM-206ENST00000487938 IFNAR1P17181 557 aa20.68■□□□□ 0.9
VIM-206ENST00000487938 TOB1P50616 345 aaPredicted RBP20.68■□□□□ 0.9
VIM-206ENST00000487938 GRIN1Q05586 938 aa20.68■□□□□ 0.9
VIM-206ENST00000487938 WTAPQ15007 396 aa20.68■□□□□ 0.9
VIM-206ENST00000487938 SYCP1Q15431 976 aa20.68■□□□□ 0.9
VIM-206ENST00000487938 KRBA2Q6ZNG9 492 aa20.68■□□□□ 0.9
VIM-206ENST00000487938 CCDC150Q8NCX0 1101 aa20.68■□□□□ 0.9
VIM-206ENST00000487938 LRP2BPQ9P2M1 347 aa20.68■□□□□ 0.9
VIM-206ENST00000487938 EIF5P55010 431 aaKnown RBP20.67■□□□□ 0.9
VIM-206ENST00000487938 RTN1Q16799 776 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 INTS5Q6P9B9 1019 aaKnown RBP20.67■□□□□ 0.9
VIM-206ENST00000487938 SMAP1Q8IYB5 467 aaPredicted RBP20.67■□□□□ 0.9
VIM-206ENST00000487938 DIS3L2Q8IYB7 885 aaKnown RBP20.67■□□□□ 0.9
VIM-206ENST00000487938 ZNF215Q9UL58 517 aaPredicted RBP20.67■□□□□ 0.9
VIM-206ENST00000487938 PCDHA5Q9Y5H7 936 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 ECM29Q5VYK3 1845 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 FAM237AA0A1B0GTK4 181 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 SERPINC1P01008 464 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 MMP1P03956 469 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 UBASH3AP57075 661 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 KRI1Q8N9T8 703 aaKnown RBP20.67■□□□□ 0.9
VIM-206ENST00000487938 KIF18AQ8NI77 898 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 NUP133Q8WUM0 1156 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 NACAP1Q9BZK3 213 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 STK36Q9NRP7 1315 aa20.67■□□□□ 0.9
VIM-206ENST00000487938 ATP2B1P20020 1258 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 STAG1Q8WVM7 1258 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 KCND1Q9NSA2 647 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 SMIM22K7EJ46 135 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 MYL5Q02045 173 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 SAFBQ15424 915 aaKnown RBP eCLIP20.66■□□□□ 0.9
VIM-206ENST00000487938 HSP90AA4PQ58FG1 418 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 OLFM4Q6UX06 510 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 ACSBG1Q96GR2 724 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 PPP1R13BQ96KQ4 1090 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 AK7Q96M32 723 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 FANCLQ9NW38 375 aa20.66■□□□□ 0.9
VIM-206ENST00000487938 MINDY4BA8MYZ0 360 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms