RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 IGF2BP3O00425 579 aaKnown RBP eCLIP24.96■■□□□ 1.59
HDAC4-209ENST00000487617 MAP4K4O95819 1239 aaPredicted RBP24.96■■□□□ 1.59
HDAC4-209ENST00000487617 INPP5BP32019 993 aa24.96■■□□□ 1.59
HDAC4-209ENST00000487617 DGKZQ13574 1117 aa24.96■■□□□ 1.59
HDAC4-209ENST00000487617 SH3BP5LQ7L8J4 393 aa24.96■■□□□ 1.59
HDAC4-209ENST00000487617 ERO1BQ86YB8 467 aa24.96■■□□□ 1.59
HDAC4-209ENST00000487617 ZNF112Q9UJU3 913 aa24.96■■□□□ 1.59
HDAC4-209ENST00000487617 IFIT2P09913 472 aaKnown RBP24.95■■□□□ 1.58
HDAC4-209ENST00000487617 GTF2A2P52657 109 aa24.95■■□□□ 1.58
HDAC4-209ENST00000487617 OTUD7BQ6GQQ9 843 aa24.95■■□□□ 1.58
HDAC4-209ENST00000487617 ABHD8Q96I13 439 aa24.95■■□□□ 1.58
HDAC4-209ENST00000487617 MS4A4AQ96JQ5 239 aa24.95■■□□□ 1.58
HDAC4-209ENST00000487617 CFHR5Q9BXR6 569 aa24.95■■□□□ 1.58
HDAC4-209ENST00000487617 TESPA1A2RU30 521 aaPredicted RBP24.94■■□□□ 1.58
HDAC4-209ENST00000487617 DDTLA6NHG4 134 aaPredicted RBP24.94■■□□□ 1.58
HDAC4-209ENST00000487617 GPR25O00155 361 aa24.94■■□□□ 1.58
HDAC4-209ENST00000487617 IGSF3O75054 1194 aa24.94■■□□□ 1.58
HDAC4-209ENST00000487617 NPM3O75607 178 aaKnown RBP24.94■■□□□ 1.58
HDAC4-209ENST00000487617 IDH1O75874 414 aaKnown RBP24.94■■□□□ 1.58
HDAC4-209ENST00000487617 BAG3O95817 575 aa24.94■■□□□ 1.58
HDAC4-209ENST00000487617 TEX11Q8IYF3 940 aa24.94■■□□□ 1.58
HDAC4-209ENST00000487617 ZNF296Q8WUU4 475 aaPredicted RBP24.94■■□□□ 1.58
HDAC4-209ENST00000487617 MCOLN1Q9GZU1 580 aa24.94■■□□□ 1.58
HDAC4-209ENST00000487617 AATFQ9NY61 560 aaKnown RBP eCLIP24.94■■□□□ 1.58
HDAC4-209ENST00000487617 NDUFB9Q9Y6M9 179 aa24.94■■□□□ 1.58
HDAC4-209ENST00000487617 SH3RF3Q8TEJ3 882 aaPredicted RBP24.93■■□□□ 1.58
HDAC4-209ENST00000487617 PTPN18Q99952 460 aa24.93■■□□□ 1.58
HDAC4-209ENST00000487617 R3HDMLQ9H3Y0 253 aa24.93■■□□□ 1.58
HDAC4-209ENST00000487617 ATRNL1Q5VV63 1379 aa24.93■■□□□ 1.58
HDAC4-209ENST00000487617 CCL15-CCL14A0A0B4J2E2 113 aa24.92■■□□□ 1.58
HDAC4-209ENST00000487617 PLCG2P16885 1265 aa24.92■■□□□ 1.58
HDAC4-209ENST00000487617 RRP1P56182 461 aaKnown RBP24.92■■□□□ 1.58
HDAC4-209ENST00000487617 CCL15Q16663 113 aa24.92■■□□□ 1.58
HDAC4-209ENST00000487617 NOM1Q5C9Z4 860 aaKnown RBP24.92■■□□□ 1.58
HDAC4-209ENST00000487617 BRI3BPQ8WY22 251 aa24.92■■□□□ 1.58
HDAC4-209ENST00000487617 AK9Q5TCS8 1911 aa24.92■■□□□ 1.58
HDAC4-209ENST00000487617 CYP7A1P22680 504 aa24.91■■□□□ 1.58
HDAC4-209ENST00000487617 PPIL2Q13356 520 aa24.91■■□□□ 1.58
HDAC4-209ENST00000487617 NOL9Q5SY16 702 aaKnown RBP24.91■■□□□ 1.58
HDAC4-209ENST00000487617 ADGRA1Q86SQ6 560 aa24.91■■□□□ 1.58
HDAC4-209ENST00000487617 ANTXR1Q9H6X2 564 aa24.91■■□□□ 1.58
HDAC4-209ENST00000487617 IRF6O14896 467 aa24.9■■□□□ 1.58
HDAC4-209ENST00000487617 PPP4CP60510 307 aa24.9■■□□□ 1.58
HDAC4-209ENST00000487617 PPATQ06203 517 aa24.9■■□□□ 1.58
HDAC4-209ENST00000487617 OSBPL5Q9H0X9 879 aaPredicted RBP24.9■■□□□ 1.58
HDAC4-209ENST00000487617 PHF20L1A8MW92 1017 aa24.89■■□□□ 1.58
HDAC4-209ENST00000487617 SLURP2P0DP57 97 aa24.89■■□□□ 1.58
HDAC4-209ENST00000487617 CETPP11597 493 aa24.89■■□□□ 1.58
HDAC4-209ENST00000487617 MAP3K10Q02779 954 aa24.89■■□□□ 1.58
HDAC4-209ENST00000487617 MAP3K12Q12852 859 aa24.89■■□□□ 1.58
HDAC4-209ENST00000487617 SNAPC2Q13487 334 aa24.89■■□□□ 1.58
HDAC4-209ENST00000487617 CTU1Q7Z7A3 348 aaKnown RBP24.89■■□□□ 1.58
HDAC4-209ENST00000487617 LRRCC1Q9C099 1032 aa24.89■■□□□ 1.58
HDAC4-209ENST00000487617 MAST2Q6P0Q8 1798 aa24.88■■□□□ 1.57
HDAC4-209ENST00000487617 FKTNO75072 461 aa24.88■■□□□ 1.57
HDAC4-209ENST00000487617 CRHR2Q13324 411 aa24.88■■□□□ 1.57
HDAC4-209ENST00000487617 MAGEB6Q8N7X4 407 aa24.88■■□□□ 1.57
HDAC4-209ENST00000487617 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.88■■□□□ 1.57
HDAC4-209ENST00000487617 TTF1Q15361 905 aaPredicted RBP24.87■■□□□ 1.57
HDAC4-209ENST00000487617 SCYL3Q8IZE3 742 aa24.87■■□□□ 1.57
HDAC4-209ENST00000487617 TGFBRAP1Q8WUH2 860 aa24.87■■□□□ 1.57
HDAC4-209ENST00000487617 DNAJC2Q99543 621 aaKnown RBP24.87■■□□□ 1.57
HDAC4-209ENST00000487617 PICK1Q9NRD5 415 aa24.87■■□□□ 1.57
HDAC4-209ENST00000487617 LAMB1P07942 1786 aa24.87■■□□□ 1.57
HDAC4-209ENST00000487617 TBC1D12O60347 775 aa24.86■■□□□ 1.57
HDAC4-209ENST00000487617 DYNLL1P63167 89 aaKnown RBP24.86■■□□□ 1.57
HDAC4-209ENST00000487617 FAM43AQ8N2R8 423 aa24.86■■□□□ 1.57
HDAC4-209ENST00000487617 MIGA1Q8NAN2 632 aa24.86■■□□□ 1.57
HDAC4-209ENST00000487617 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.86■■□□□ 1.57
HDAC4-209ENST00000487617 DOCK2Q92608 1830 aa24.86■■□□□ 1.57
HDAC4-209ENST00000487617 COL2A1P02458 1487 aaPredicted RBP24.85■■□□□ 1.57
HDAC4-209ENST00000487617 SMARCA5O60264 1052 aaPredicted RBP24.85■■□□□ 1.57
HDAC4-209ENST00000487617 MAPKAPK5Q8IW41 473 aa24.85■■□□□ 1.57
HDAC4-209ENST00000487617 CCDC85CA6NKD9 419 aa24.84■■□□□ 1.57
HDAC4-209ENST00000487617 FAM196BA6NMK8 535 aa24.84■■□□□ 1.57
HDAC4-209ENST00000487617 GOLIM4O00461 696 aa24.84■■□□□ 1.57
HDAC4-209ENST00000487617 CTNND1O60716 968 aaKnown RBP24.84■■□□□ 1.57
HDAC4-209ENST00000487617 TAF1CQ15572 869 aaPredicted RBP24.84■■□□□ 1.57
HDAC4-209ENST00000487617 TMED8Q6PL24 325 aaPredicted RBP24.84■■□□□ 1.57
HDAC4-209ENST00000487617 DHX36Q9H2U1 1008 aaKnown RBP24.84■■□□□ 1.57
HDAC4-209ENST00000487617 DCTPP1Q9H773 170 aa24.84■■□□□ 1.57
HDAC4-209ENST00000487617 KCNH4Q9UQ05 1017 aa24.84■■□□□ 1.57
HDAC4-209ENST00000487617 FLT1P17948 1338 aa24.84■■□□□ 1.57
HDAC4-209ENST00000487617 BTBD19C9JJ37 291 aa24.83■■□□□ 1.57
HDAC4-209ENST00000487617 ATP5JP18859 108 aa24.83■■□□□ 1.57
HDAC4-209ENST00000487617 CERS3Q8IU89 383 aa24.83■■□□□ 1.57
HDAC4-209ENST00000487617 BOLA2Q9H3K6 86 aa24.83■■□□□ 1.57
HDAC4-209ENST00000487617 ZFYVE28Q9HCC9 887 aa24.83■■□□□ 1.57
HDAC4-209ENST00000487617 PTPRAP18433 802 aa24.82■■□□□ 1.56
HDAC4-209ENST00000487617 CRBNQ96SW2 442 aa24.82■■□□□ 1.56
HDAC4-209ENST00000487617 PI4KBQ9UBF8 816 aa24.82■■□□□ 1.56
HDAC4-209ENST00000487617 MYO5AQ9Y4I1 1855 aaKnown RBP24.82■■□□□ 1.56
HDAC4-209ENST00000487617 PCDHB15Q9Y5E8 787 aa24.82■■□□□ 1.56
HDAC4-209ENST00000487617 ZHX2Q9Y6X8 837 aa24.82■■□□□ 1.56
HDAC4-209ENST00000487617 PKN2Q16513 984 aaKnown RBP24.81■■□□□ 1.56
HDAC4-209ENST00000487617 SLC9C2Q5TAH2 1124 aa24.81■■□□□ 1.56
HDAC4-209ENST00000487617 EDC3Q96F86 508 aaKnown RBP24.81■■□□□ 1.56
HDAC4-209ENST00000487617 ZCCHC17Q9NP64 241 aaKnown RBP24.81■■□□□ 1.56
HDAC4-209ENST00000487617 CXCL11O14625 94 aa24.8■■□□□ 1.56
HDAC4-209ENST00000487617 PDE6AP16499 860 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms