RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 GSG1L2A8MUP6 293 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 ZNF213O14771 459 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 PRKAB2O43741 272 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 USP17L8P0C7I0 530 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 RPS12P25398 132 aaKnown RBP16.78■□□□□ 0.28
CUX1-209ENST00000487284 PPP4CP60510 307 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 HAND2P61296 217 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 ME3Q16798 604 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 IFNL3Q8IZI9 196 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 GPC2Q8N158 579 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 NOL10Q9BSC4 688 aaKnown RBP16.78■□□□□ 0.28
CUX1-209ENST00000487284 MRIQ9BWK5 157 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 NBPF3Q9H094 633 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 SERPINA10Q9UK55 444 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 FOCADQ5VW36 1801 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 ECM29Q5VYK3 1845 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 NAV1Q8NEY1 1877 aa16.78■□□□□ 0.28
CUX1-209ENST00000487284 BAG3O95817 575 aa16.77■□□□□ 0.28
CUX1-209ENST00000487284 APPP05067 770 aa16.77■□□□□ 0.28
CUX1-209ENST00000487284 RBM5P52756 815 aaKnown RBP eCLIP16.77■□□□□ 0.28
CUX1-209ENST00000487284 ST3GAL1Q11201 340 aa16.77■□□□□ 0.28
CUX1-209ENST00000487284 OGFOD1Q8N543 542 aa16.77■□□□□ 0.28
CUX1-209ENST00000487284 SH3RF3Q8TEJ3 882 aaPredicted RBP16.77■□□□□ 0.28
CUX1-209ENST00000487284 ZDHHC15Q96MV8 337 aa16.77■□□□□ 0.28
CUX1-209ENST00000487284 HDAC9Q9UKV0 1011 aa16.77■□□□□ 0.28
CUX1-209ENST00000487284 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.77■□□□□ 0.28
CUX1-209ENST00000487284 SLC4A4Q9Y6R1 1079 aa16.77■□□□□ 0.28
CUX1-209ENST00000487284 CFAP100Q494V2 611 aa16.77■□□□□ 0.27
CUX1-209ENST00000487284 APOBEC3HQ6NTF7 200 aaKnown RBP16.77■□□□□ 0.27
CUX1-209ENST00000487284 CLEC17AQ6ZS10 378 aa16.77■□□□□ 0.27
CUX1-209ENST00000487284 Q6ZUG5 572 aa16.77■□□□□ 0.27
CUX1-209ENST00000487284 FBXL16Q8N461 479 aa16.77■□□□□ 0.27
CUX1-209ENST00000487284 SDR42E1Q8WUS8 393 aa16.77■□□□□ 0.27
CUX1-209ENST00000487284 DPF2Q92785 391 aa16.77■□□□□ 0.27
CUX1-209ENST00000487284 NAPBQ9H115 298 aa16.77■□□□□ 0.27
CUX1-209ENST00000487284 WDR19Q8NEZ3 1342 aa16.76■□□□□ 0.27
CUX1-209ENST00000487284 DDNO94850 711 aaPredicted RBP16.76■□□□□ 0.27
CUX1-209ENST00000487284 RHBDL3P58872 404 aa16.76■□□□□ 0.27
CUX1-209ENST00000487284 TBC1D10CQ8IV04 446 aa16.76■□□□□ 0.27
CUX1-209ENST00000487284 CCDC83Q8IWF9 413 aa16.76■□□□□ 0.27
CUX1-209ENST00000487284 MB21D2Q8IYB1 491 aaPredicted RBP16.76■□□□□ 0.27
CUX1-209ENST00000487284 NACAP1Q9BZK3 213 aa16.76■□□□□ 0.27
CUX1-209ENST00000487284 ZC3H4Q9UPT8 1303 aaKnown RBP16.76■□□□□ 0.27
CUX1-209ENST00000487284 TCHHQ07283 1943 aa16.75■□□□□ 0.27
CUX1-209ENST00000487284 MCM4P33991 863 aa16.75■□□□□ 0.27
CUX1-209ENST00000487284 ZNF280AP59817 542 aaPredicted RBP16.75■□□□□ 0.27
CUX1-209ENST00000487284 PKP1Q13835 747 aa16.75■□□□□ 0.27
CUX1-209ENST00000487284 MICALL2Q8IY33 904 aa16.75■□□□□ 0.27
CUX1-209ENST00000487284 NCOA7Q8NI08 942 aa16.75■□□□□ 0.27
CUX1-209ENST00000487284 CRNKL1Q9BZJ0 848 aaKnown RBP16.75■□□□□ 0.27
CUX1-209ENST00000487284 CNOT7Q9UIV1 285 aaKnown RBP16.75■□□□□ 0.27
CUX1-209ENST00000487284 DDX60LQ5H9U9 1706 aaKnown RBP16.74■□□□□ 0.27
CUX1-209ENST00000487284 PLCG2P16885 1265 aa16.74■□□□□ 0.27
CUX1-209ENST00000487284 CDC42EP5Q6NZY7 148 aa16.74■□□□□ 0.27
CUX1-209ENST00000487284 CERS3Q8IU89 383 aa16.74■□□□□ 0.27
CUX1-209ENST00000487284 TEX11Q8IYF3 940 aa16.74■□□□□ 0.27
CUX1-209ENST00000487284 PRMT6Q96LA8 375 aaPredicted RBP16.74■□□□□ 0.27
CUX1-209ENST00000487284 GBP4Q96PP9 640 aa16.74■□□□□ 0.27
CUX1-209ENST00000487284 MYOZ2Q9NPC6 264 aa16.74■□□□□ 0.27
CUX1-209ENST00000487284 ZDHHC9Q9Y397 364 aa16.74■□□□□ 0.27
CUX1-209ENST00000487284 DCAF8L1A6NGE4 600 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 SPDYE2BA6NHP3 402 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 EGFRP00533 1210 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 SPDYE6P0CI01 402 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 MCM5P33992 734 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 DLGAP5Q15398 846 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 RALYLQ86SE5 291 aaKnown RBP16.73■□□□□ 0.27
CUX1-209ENST00000487284 NECAB1Q8N987 351 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 BRF1Q92994 677 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 USP40Q9NVE5 1235 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 SMC3Q9UQE7 1217 aa16.73■□□□□ 0.27
CUX1-209ENST00000487284 BRD1O95696 1058 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 TDO2P48775 406 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 EVCP57679 992 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 ANTXR2P58335 489 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 SAMD7Q7Z3H4 446 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 MTMR14Q8NCE2 650 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 TGFBRAP1Q8WUH2 860 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 GTF3C6Q969F1 213 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 ZBED3Q96IU2 234 aaPredicted RBP16.72■□□□□ 0.27
CUX1-209ENST00000487284 LRRC2Q9BYS8 371 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 TDRD3Q9H7E2 651 aaKnown RBP16.72■□□□□ 0.27
CUX1-209ENST00000487284 DCP1AQ9NPI6 582 aaPredicted RBP16.72■□□□□ 0.27
CUX1-209ENST00000487284 GPRC5DQ9NZD1 345 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 MYH1P12882 1939 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 PRC1O43663 620 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 USP5P45974 858 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 MMP14P50281 582 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 FGD1P98174 961 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 TRDNQ13061 729 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 RBM26Q5T8P6 1007 aaKnown RBP16.72■□□□□ 0.27
CUX1-209ENST00000487284 DPY19L2Q6NUT2 758 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 GIMAP6Q6P9H5 292 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 ATP8A2Q9NTI2 1148 aa16.72■□□□□ 0.27
CUX1-209ENST00000487284 MYH15Q9Y2K3 1946 aa16.71■□□□□ 0.27
CUX1-209ENST00000487284 DDX11L8A8MPP1 907 aa16.71■□□□□ 0.27
CUX1-209ENST00000487284 H7C1D1 291 aa16.71■□□□□ 0.27
CUX1-209ENST00000487284 PFKFB2O60825 505 aa16.71■□□□□ 0.27
CUX1-209ENST00000487284 WDHD1O75717 1129 aaPredicted RBP16.71■□□□□ 0.27
CUX1-209ENST00000487284 CACNB3P54284 484 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms