RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-208ENST00000485627 ZNF384Q8TF68 577 aa11.26□□□□□ -0.61
CTSA-208ENST00000485627 CHMP4CQ96CF2 233 aa11.26□□□□□ -0.61
CTSA-208ENST00000485627 TCEANC2Q96MN5 208 aa11.26□□□□□ -0.61
CTSA-208ENST00000485627 PSMD1Q99460 953 aa11.26□□□□□ -0.61
CTSA-208ENST00000485627 KRT23Q9C075 422 aa11.26□□□□□ -0.61
CTSA-208ENST00000485627 TOMM22Q9NS69 142 aa11.26□□□□□ -0.61
CTSA-208ENST00000485627 CACNA1SQ13698 1873 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 USP17L3A6NCW0 530 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 USP17L4A6NCW7 530 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 F8W031 263 aaPredicted RBP11.25□□□□□ -0.61
CTSA-208ENST00000485627 SLC34A2O95436 690 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 BTDP43251 543 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 PPP4CP60510 307 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 FKBP1AP62942 108 aaKnown RBP11.25□□□□□ -0.61
CTSA-208ENST00000485627 CTDSPL2Q05D32 466 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 PPARAQ07869 468 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 DIXDC1Q155Q3 683 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 GRIK5Q16478 980 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 AKNAD1Q5T1N1 836 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 STRIP1Q5VSL9 837 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 USP17L1Q7RTZ2 530 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 LARGE2Q8N3Y3 721 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 SMC1BQ8NDV3 1235 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 FAM163AQ96GL9 167 aaPredicted RBP11.25□□□□□ -0.61
CTSA-208ENST00000485627 LARP6Q9BRS8 491 aaKnown RBP11.25□□□□□ -0.61
CTSA-208ENST00000485627 VPS33BQ9H267 617 aa11.25□□□□□ -0.61
CTSA-208ENST00000485627 TTF2Q9UNY4 1162 aaKnown RBP11.25□□□□□ -0.61
CTSA-208ENST00000485627 BRCA1P38398 1863 aaKnown RBP11.25□□□□□ -0.61
CTSA-208ENST00000485627 MAST2Q6P0Q8 1798 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 CCDC88AQ3V6T2 1871 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 GPR75-ASB3A0A0A6YYF3 556 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 PRC1O43663 620 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 NUCB2P80303 420 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 EXOSC10Q01780 885 aaKnown RBP11.24□□□□□ -0.61
CTSA-208ENST00000485627 TOB2Q14106 344 aaPredicted RBP11.24□□□□□ -0.61
CTSA-208ENST00000485627 RRP12Q5JTH9 1297 aaKnown RBP11.24□□□□□ -0.61
CTSA-208ENST00000485627 TBC1D10CQ8IV04 446 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 TEX11Q8IYF3 940 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 SH3RF3Q8TEJ3 882 aaPredicted RBP11.24□□□□□ -0.61
CTSA-208ENST00000485627 STAG1Q8WVM7 1258 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 BRF1Q92994 677 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 LRRC2Q9BYS8 371 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 DCP1AQ9NPI6 582 aaPredicted RBP11.24□□□□□ -0.61
CTSA-208ENST00000485627 ARPP21Q9UBL0 812 aaPredicted RBP11.24□□□□□ -0.61
CTSA-208ENST00000485627 NAP1L2Q9ULW6 460 aaPredicted RBP11.24□□□□□ -0.61
CTSA-208ENST00000485627 SMC3Q9UQE7 1217 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 WDR19Q8NEZ3 1342 aa11.24□□□□□ -0.61
CTSA-208ENST00000485627 B4E1Z4 1266 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 USP17L12C9JPN9 530 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 USP17L21D6R901 530 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 PCP11498 1178 aaKnown RBP11.23□□□□□ -0.61
CTSA-208ENST00000485627 SART3Q15020 963 aaKnown RBP11.23□□□□□ -0.61
CTSA-208ENST00000485627 CCDC83Q8IWF9 413 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 NIM1KQ8IY84 436 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 MB21D2Q8IYB1 491 aaPredicted RBP11.23□□□□□ -0.61
CTSA-208ENST00000485627 TGFBRAP1Q8WUH2 860 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 TEKT1Q969V4 418 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 ZNF277Q9NRM2 450 aaPredicted RBP11.23□□□□□ -0.61
CTSA-208ENST00000485627 MCM9Q9NXL9 1143 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 ANAPC4Q9UJX5 808 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 TPCN1Q9ULQ1 816 aa11.23□□□□□ -0.61
CTSA-208ENST00000485627 ERICH2A1L162 156 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 GAKO14976 1311 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 POLR3DP05423 398 aaPredicted RBP11.22□□□□□ -0.61
CTSA-208ENST00000485627 NEDD4P46934 1319 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 RBM5P52756 815 aaKnown RBP eCLIP11.22□□□□□ -0.61
CTSA-208ENST00000485627 PDE4BQ07343 736 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 STK3Q13188 491 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 ME3Q16798 604 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 SBK1Q52WX2 424 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 DACT2Q5SW24 774 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 CTR9Q6PD62 1173 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 CHST3Q7LGC8 479 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 STK11IPQ8N1F8 1099 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 FBXL16Q8N461 479 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 ESR2Q92731 530 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 TMEM87BQ96K49 555 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 TAOK3Q9H2K8 898 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 MKRN1Q9UHC7 482 aaKnown RBP11.22□□□□□ -0.61
CTSA-208ENST00000485627 DLEC1Q9Y238 1755 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 DAGLAQ9Y4D2 1042 aa11.22□□□□□ -0.61
CTSA-208ENST00000485627 MYO3BQ8WXR4 1341 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 FOXN1O15353 648 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 KDM4AO75164 1064 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 LARGE1O95461 756 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 DDIT3P35638 169 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 IARSP41252 1262 aaKnown RBP11.21□□□□□ -0.61
CTSA-208ENST00000485627 SCNN1DP51172 638 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 HDLBPQ00341 1268 aaKnown RBP11.21□□□□□ -0.61
CTSA-208ENST00000485627 APOBRQ0VD83 1088 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 COL9A3Q14050 684 aaPredicted RBP11.21□□□□□ -0.61
CTSA-208ENST00000485627 HHIPL2Q6UWX4 724 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 SYNE3Q6ZMZ3 975 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 NFXL1Q6ZNB6 911 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 KIAA0825Q8IV33 1275 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 CERS5Q8N5B7 392 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 NECAB1Q8N987 351 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 JDP2Q8WYK2 163 aa11.21□□□□□ -0.61
CTSA-208ENST00000485627 ZNF274Q96GC6 653 aaPredicted RBP11.21□□□□□ -0.61
CTSA-208ENST00000485627 MXD3Q9BW11 206 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms