RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 SIRT2Q8IXJ6 389 aa20.3■□□□□ 0.84
TRIM54-203ENST00000485306 NSUN4Q96CB9 384 aaKnown RBP20.3■□□□□ 0.84
TRIM54-203ENST00000485306 ZNF512BQ96KM6 892 aaPredicted RBP20.3■□□□□ 0.84
TRIM54-203ENST00000485306 WDHD1O75717 1129 aaPredicted RBP20.29■□□□□ 0.84
TRIM54-203ENST00000485306 CNKSR2Q8WXI2 1034 aa20.29■□□□□ 0.84
TRIM54-203ENST00000485306 MS4A4AQ96JQ5 239 aa20.29■□□□□ 0.84
TRIM54-203ENST00000485306 NOL10Q9BSC4 688 aaKnown RBP20.29■□□□□ 0.84
TRIM54-203ENST00000485306 SNRKQ9NRH2 765 aa20.29■□□□□ 0.84
TRIM54-203ENST00000485306 SNCAIPQ9Y6H5 919 aa20.29■□□□□ 0.84
TRIM54-203ENST00000485306 CCL15-CCL14A0A0B4J2E2 113 aa20.28■□□□□ 0.84
TRIM54-203ENST00000485306 IGSF3O75054 1194 aa20.28■□□□□ 0.84
TRIM54-203ENST00000485306 PPATQ06203 517 aa20.28■□□□□ 0.84
TRIM54-203ENST00000485306 CCL15Q16663 113 aa20.28■□□□□ 0.84
TRIM54-203ENST00000485306 ZFPM1Q8IX07 1006 aa20.28■□□□□ 0.84
TRIM54-203ENST00000485306 EAF2Q96CJ1 260 aaPredicted RBP20.28■□□□□ 0.84
TRIM54-203ENST00000485306 PTPN18Q99952 460 aa20.28■□□□□ 0.84
TRIM54-203ENST00000485306 R3HDMLQ9H3Y0 253 aa20.28■□□□□ 0.84
TRIM54-203ENST00000485306 ZNF112Q9UJU3 913 aa20.28■□□□□ 0.84
TRIM54-203ENST00000485306 CETPP11597 493 aa20.27■□□□□ 0.84
TRIM54-203ENST00000485306 INPP5BP32019 993 aa20.27■□□□□ 0.84
TRIM54-203ENST00000485306 PPIL2Q13356 520 aa20.27■□□□□ 0.84
TRIM54-203ENST00000485306 SNAPC2Q13487 334 aa20.27■□□□□ 0.84
TRIM54-203ENST00000485306 PICALMQ13492 652 aa20.27■□□□□ 0.84
TRIM54-203ENST00000485306 CCDC8Q9H0W5 538 aaPredicted RBP20.27■□□□□ 0.84
TRIM54-203ENST00000485306 DBNLQ9UJU6 430 aaKnown RBP20.27■□□□□ 0.84
TRIM54-203ENST00000485306 NPM3O75607 178 aaKnown RBP20.26■□□□□ 0.83
TRIM54-203ENST00000485306 BAG3O95817 575 aa20.26■□□□□ 0.83
TRIM54-203ENST00000485306 CRHR2Q13324 411 aa20.26■□□□□ 0.83
TRIM54-203ENST00000485306 RHPN1Q8TCX5 695 aa20.26■□□□□ 0.83
TRIM54-203ENST00000485306 ZNF384Q8TF68 577 aa20.26■□□□□ 0.83
TRIM54-203ENST00000485306 BRI3BPQ8WY22 251 aa20.26■□□□□ 0.83
TRIM54-203ENST00000485306 TLR7Q9NYK1 1049 aaKnown RBP20.26■□□□□ 0.83
TRIM54-203ENST00000485306 PCDHB15Q9Y5E8 787 aa20.26■□□□□ 0.83
TRIM54-203ENST00000485306 IRF6O14896 467 aa20.25■□□□□ 0.83
TRIM54-203ENST00000485306 RHBDL3P58872 404 aa20.25■□□□□ 0.83
TRIM54-203ENST00000485306 NAA16Q6N069 864 aaPredicted RBP20.25■□□□□ 0.83
TRIM54-203ENST00000485306 ZFYVE28Q9HCC9 887 aa20.25■□□□□ 0.83
TRIM54-203ENST00000485306 CYP2E1P05181 493 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-203ENST00000485306 PLCG2P16885 1265 aa20.24■□□□□ 0.83
TRIM54-203ENST00000485306 HDAC1Q13547 482 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-203ENST00000485306 TAF1CQ15572 869 aaPredicted RBP20.24■□□□□ 0.83
TRIM54-203ENST00000485306 NOL9Q5SY16 702 aaKnown RBP20.24■□□□□ 0.83
TRIM54-203ENST00000485306 AACSQ86V21 672 aa20.24■□□□□ 0.83
TRIM54-203ENST00000485306 KIF1BPQ96EK5 621 aa20.24■□□□□ 0.83
TRIM54-203ENST00000485306 ERO1AQ96HE7 468 aa20.24■□□□□ 0.83
TRIM54-203ENST00000485306 IL1RAPL2Q9NP60 686 aa20.24■□□□□ 0.83
TRIM54-203ENST00000485306 DDX4Q9NQI0 724 aaKnown RBP20.24■□□□□ 0.83
TRIM54-203ENST00000485306 DOCK2Q92608 1830 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 DDTLA6NHG4 134 aaPredicted RBP20.23■□□□□ 0.83
TRIM54-203ENST00000485306 APBB1O00213 710 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 RAB11FIP3O75154 756 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 KCNA4P22459 653 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 ZAP70P43403 619 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 SH3BP5LQ7L8J4 393 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 TEX11Q8IYF3 940 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 RWDD1Q9H446 243 aaPredicted RBP20.23■□□□□ 0.83
TRIM54-203ENST00000485306 ZCCHC17Q9NP64 241 aaKnown RBP20.23■□□□□ 0.83
TRIM54-203ENST00000485306 PICK1Q9NRD5 415 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 PPP4R2Q9NY27 417 aa20.23■□□□□ 0.83
TRIM54-203ENST00000485306 RFX7Q2KHR2 1363 aa20.22■□□□□ 0.83
TRIM54-203ENST00000485306 SP3Q02447 781 aa20.22■□□□□ 0.83
TRIM54-203ENST00000485306 MAP3K10Q02779 954 aa20.22■□□□□ 0.83
TRIM54-203ENST00000485306 CLASRPQ8N2M8 674 aaKnown RBP20.22■□□□□ 0.83
TRIM54-203ENST00000485306 PHF20L1A8MW92 1017 aa20.21■□□□□ 0.83
TRIM54-203ENST00000485306 CTNND1O60716 968 aaKnown RBP20.21■□□□□ 0.83
TRIM54-203ENST00000485306 MAPK8IP2Q13387 824 aaPredicted RBP20.21■□□□□ 0.83
TRIM54-203ENST00000485306 ARHGEF6Q15052 776 aa20.21■□□□□ 0.83
TRIM54-203ENST00000485306 FBXO46Q6PJ61 603 aaPredicted RBP20.21■□□□□ 0.83
TRIM54-203ENST00000485306 FAM43AQ8N2R8 423 aa20.21■□□□□ 0.83
TRIM54-203ENST00000485306 TBC1D12O60347 775 aa20.2■□□□□ 0.82
TRIM54-203ENST00000485306 PPP4CP60510 307 aa20.2■□□□□ 0.82
TRIM54-203ENST00000485306 SCYL3Q8IZE3 742 aa20.2■□□□□ 0.82
TRIM54-203ENST00000485306 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.2■□□□□ 0.82
TRIM54-203ENST00000485306 AATFQ9NY61 560 aaKnown RBP eCLIP20.2■□□□□ 0.82
TRIM54-203ENST00000485306 HPS5Q9UPZ3 1129 aa20.2■□□□□ 0.82
TRIM54-203ENST00000485306 KCNH4Q9UQ05 1017 aa20.2■□□□□ 0.82
TRIM54-203ENST00000485306 TRIM17Q9Y577 477 aa20.2■□□□□ 0.82
TRIM54-203ENST00000485306 ATRNL1Q5VV63 1379 aa20.2■□□□□ 0.82
TRIM54-203ENST00000485306 BTBD19C9JJ37 291 aa20.19■□□□□ 0.82
TRIM54-203ENST00000485306 CXCL11O14625 94 aa20.19■□□□□ 0.82
TRIM54-203ENST00000485306 IDH1O75874 414 aaKnown RBP20.19■□□□□ 0.82
TRIM54-203ENST00000485306 IFIT2P09913 472 aaKnown RBP20.19■□□□□ 0.82
TRIM54-203ENST00000485306 RGS19P49795 217 aa20.19■□□□□ 0.82
TRIM54-203ENST00000485306 TMED8Q6PL24 325 aaPredicted RBP20.19■□□□□ 0.82
TRIM54-203ENST00000485306 SH3RF3Q8TEJ3 882 aaPredicted RBP20.19■□□□□ 0.82
TRIM54-203ENST00000485306 OSBPL5Q9H0X9 879 aaPredicted RBP20.19■□□□□ 0.82
TRIM54-203ENST00000485306 PIH1D3Q9NQM4 214 aaKnown RBP20.19■□□□□ 0.82
TRIM54-203ENST00000485306 MAP3K12Q12852 859 aa20.18■□□□□ 0.82
TRIM54-203ENST00000485306 CERS3Q8IU89 383 aa20.18■□□□□ 0.82
TRIM54-203ENST00000485306 DHX36Q9H2U1 1008 aaKnown RBP20.18■□□□□ 0.82
TRIM54-203ENST00000485306 ZHX2Q9Y6X8 837 aa20.18■□□□□ 0.82
TRIM54-203ENST00000485306 MAST2Q6P0Q8 1798 aa20.18■□□□□ 0.82
TRIM54-203ENST00000485306 COL2A1P02458 1487 aaPredicted RBP20.18■□□□□ 0.82
TRIM54-203ENST00000485306 TLR2O60603 784 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 PTPRAP18433 802 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 CYP7A1P22680 504 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 TTF1Q15361 905 aaPredicted RBP20.17■□□□□ 0.82
TRIM54-203ENST00000485306 OTOP1Q7RTM1 612 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 ANKRD23Q86SG2 305 aa20.17■□□□□ 0.82
TRIM54-203ENST00000485306 CD99L2Q8TCZ2 262 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms