RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 PPP1R9AQ9ULJ8 1098 aa6.48□□□□□ -1.37
VPS50-217ENST00000485140 FANCGO15287 622 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 RLBP1P12271 317 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 ZC3H12AQ5D1E8 599 aaKnown RBP6.47□□□□□ -1.37
VPS50-217ENST00000485140 LLGL2Q6P1M3 1020 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 ZNF765Q7L2R6 523 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 C3orf58Q8NDZ4 430 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 CBX8Q9HC52 389 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 SSU72Q9NP77 194 aaKnown RBP6.47□□□□□ -1.37
VPS50-217ENST00000485140 C1GALT1Q9NS00 363 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 SLC5A6Q9Y289 635 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 PCDHGC5Q9Y5F6 944 aa6.47□□□□□ -1.37
VPS50-217ENST00000485140 FAM170BA6NMN3 283 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 BIN1O00499 593 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 ZNF862O60290 1169 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 RNGTTO60942 597 aaKnown RBP6.46□□□□□ -1.38
VPS50-217ENST00000485140 PRPF40AO75400 957 aaKnown RBP6.46□□□□□ -1.38
VPS50-217ENST00000485140 ECEL1O95672 775 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 JUNBP17275 347 aaPredicted RBP6.46□□□□□ -1.38
VPS50-217ENST00000485140 ADMP35318 185 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 ZNF157P51786 506 aaPredicted RBP6.46□□□□□ -1.38
VPS50-217ENST00000485140 ZNF252P-AS1Q0IIN9 211 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 ARHGAP27Q6ZUM4 889 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 TP53INP2Q8IXH6 220 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 BCL11AQ9H165 835 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 PICK1Q9NRD5 415 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 DISC1Q9NRI5 854 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 CACNA2D2Q9NY47 1150 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 GTF2IRD1Q9UHL9 959 aa6.46□□□□□ -1.38
VPS50-217ENST00000485140 LMNB1P20700 586 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 GNA15P30679 374 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 HOXA10P31260 410 aaPredicted RBP6.45□□□□□ -1.38
VPS50-217ENST00000485140 MAP1SQ66K74 1059 aaPredicted RBP6.45□□□□□ -1.38
VPS50-217ENST00000485140 CDC37L1Q7L3B6 337 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS50-217ENST00000485140 FLCNQ8NFG4 579 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 NETO1Q8TDF5 533 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 ASIC4Q96FT7 647 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 FMNL2Q96PY5 1086 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 GOLGA2P5Q9HBQ8 144 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 LRRC4CQ9HCJ2 640 aa6.45□□□□□ -1.38
VPS50-217ENST00000485140 LDHBP07195 334 aaKnown RBP6.44□□□□□ -1.38
VPS50-217ENST00000485140 TAL1P17542 331 aaPredicted RBP6.44□□□□□ -1.38
VPS50-217ENST00000485140 ERCC3P19447 782 aa6.44□□□□□ -1.38
VPS50-217ENST00000485140 EIF4BP23588 611 aaKnown RBP6.44□□□□□ -1.38
VPS50-217ENST00000485140 RPS26P62854 115 aaKnown RBP6.44□□□□□ -1.38
VPS50-217ENST00000485140 TTLL4Q14679 1199 aa6.44□□□□□ -1.38
VPS50-217ENST00000485140 IFI16Q16666 785 aaKnown RBP6.44□□□□□ -1.38
VPS50-217ENST00000485140 PI16Q6UXB8 463 aa6.44□□□□□ -1.38
VPS50-217ENST00000485140 ZC3H12CQ9C0D7 883 aaKnown RBP6.44□□□□□ -1.38
VPS50-217ENST00000485140 VAV3Q9UKW4 847 aa6.44□□□□□ -1.38
VPS50-217ENST00000485140 SNX11Q9Y5W9 270 aa6.44□□□□□ -1.38
VPS50-217ENST00000485140 TACC3Q9Y6A5 838 aa6.44□□□□□ -1.38
VPS50-217ENST00000485140 TMEM265A0A087WTH1 108 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 IGF2BP3O00425 579 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS50-217ENST00000485140 ENC1O14682 589 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 FAM87AP0C7U9 286 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 PDIA4P13667 645 aaKnown RBP6.43□□□□□ -1.38
VPS50-217ENST00000485140 ZNF746Q6NUN9 644 aaPredicted RBP6.43□□□□□ -1.38
VPS50-217ENST00000485140 TPTE2Q6XPS3 522 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 SND1Q7KZF4 910 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS50-217ENST00000485140 HDXQ7Z353 690 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 ZNF507Q8TCN5 953 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 GPBAR1Q8TDU6 330 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 COX4I2Q96KJ9 171 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 ZC3H7BQ9UGR2 993 aaKnown RBP6.43□□□□□ -1.38
VPS50-217ENST00000485140 ADGRE2Q9UHX3 823 aa6.43□□□□□ -1.38
VPS50-217ENST00000485140 PRKCQQ04759 706 aa6.42□□□□□ -1.38
VPS50-217ENST00000485140 ELMO3Q96BJ8 720 aa6.42□□□□□ -1.38
VPS50-217ENST00000485140 WDR89Q96FK6 387 aaPredicted RBP6.42□□□□□ -1.38
VPS50-217ENST00000485140 SNCAIPQ9Y6H5 919 aa6.42□□□□□ -1.38
VPS50-217ENST00000485140 USP17L7P0C7H9 530 aa6.41□□□□□ -1.38
VPS50-217ENST00000485140 HCLS1P14317 486 aaPredicted RBP6.41□□□□□ -1.38
VPS50-217ENST00000485140 EAPPQ56P03 285 aaPredicted RBP6.41□□□□□ -1.38
VPS50-217ENST00000485140 ABI1Q8IZP0 508 aa6.41□□□□□ -1.38
VPS50-217ENST00000485140 ISL2Q96A47 359 aa6.41□□□□□ -1.38
VPS50-217ENST00000485140 DUSP23Q9BVJ7 150 aa6.41□□□□□ -1.38
VPS50-217ENST00000485140 OSBPL7Q9BZF2 842 aa6.41□□□□□ -1.38
VPS50-217ENST00000485140 TTF2Q9UNY4 1162 aaKnown RBP6.41□□□□□ -1.38
VPS50-217ENST00000485140 RNF114Q9Y508 228 aa6.41□□□□□ -1.38
VPS50-217ENST00000485140 P4HBP07237 508 aaKnown RBP6.4□□□□□ -1.38
VPS50-217ENST00000485140 BMP6P22004 513 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 CAP2P40123 477 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 LCE1DQ5T752 114 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 PCNX4Q63HM2 1172 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 CBLL1Q75N03 491 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 BCL7CQ8WUZ0 217 aaPredicted RBP6.4□□□□□ -1.38
VPS50-217ENST00000485140 ASB11Q8WXH4 323 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 HRASLS5Q96KN8 279 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 PCDHA4Q9UN74 947 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 AK5Q9Y6K8 562 aa6.4□□□□□ -1.38
VPS50-217ENST00000485140 GNAT3A8MTJ3 354 aa6.39□□□□□ -1.39
VPS50-217ENST00000485140 DYNC1LI2O43237 492 aaPredicted RBP6.39□□□□□ -1.39
VPS50-217ENST00000485140 LRIG2O94898 1065 aa6.39□□□□□ -1.39
VPS50-217ENST00000485140 CEACAM5P06731 702 aa6.39□□□□□ -1.39
VPS50-217ENST00000485140 YBX3P16989 372 aaKnown RBP eCLIP6.39□□□□□ -1.39
VPS50-217ENST00000485140 CDK5R2Q13319 367 aa6.39□□□□□ -1.39
VPS50-217ENST00000485140 ZBTB37Q5TC79 503 aa6.39□□□□□ -1.39
VPS50-217ENST00000485140 PAK6Q9NQU5 681 aaPredicted RBP6.39□□□□□ -1.39
VPS50-217ENST00000485140 PRDM10Q9NQV6 1147 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms