RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 K7ELQ4 463 aaPredicted RBP10.11□□□□□ -0.79
USP40-213ENST00000483216 PTPN11Q06124 597 aaPredicted RBP10.11□□□□□ -0.79
USP40-213ENST00000483216 HS2ST1Q7LGA3 356 aa10.11□□□□□ -0.79
USP40-213ENST00000483216 TRIM42Q8IWZ5 723 aa10.11□□□□□ -0.79
USP40-213ENST00000483216 FBLIM1Q8WUP2 373 aa10.11□□□□□ -0.79
USP40-213ENST00000483216 MIR1-1HGQ9H1L0 117 aa10.11□□□□□ -0.79
USP40-213ENST00000483216 ACSS3Q9H6R3 686 aa10.11□□□□□ -0.79
USP40-213ENST00000483216 METTL5Q9NRN9 209 aaKnown RBP10.11□□□□□ -0.79
USP40-213ENST00000483216 RXRBP28702 533 aa10.1□□□□□ -0.79
USP40-213ENST00000483216 LMNB2Q03252 620 aa10.1□□□□□ -0.79
USP40-213ENST00000483216 CCDC84Q86UT8 332 aaPredicted RBP10.1□□□□□ -0.79
USP40-213ENST00000483216 SLC51AQ86UW1 340 aa10.1□□□□□ -0.79
USP40-213ENST00000483216 C7orf69Q9H7B7 122 aa10.1□□□□□ -0.79
USP40-213ENST00000483216 ADAM23O75077 832 aa10.09□□□□□ -0.79
USP40-213ENST00000483216 GBP2P32456 591 aaPredicted RBP10.09□□□□□ -0.79
USP40-213ENST00000483216 RING1Q06587 406 aa10.09□□□□□ -0.79
USP40-213ENST00000483216 SEPT6Q14141 434 aa10.09□□□□□ -0.79
USP40-213ENST00000483216 RHOVQ96L33 236 aa10.09□□□□□ -0.79
USP40-213ENST00000483216 FAM95CA0A1B0GW59 222 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 HMX2A2RU54 273 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 ZNF76P36508 570 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 FANCCQ00597 558 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 CAMK2GQ13555 558 aaPredicted RBP10.08□□□□□ -0.8
USP40-213ENST00000483216 RNF214Q8ND24 703 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 SEMA6CQ9H3T2 930 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 KBTBD4Q9NVX7 518 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 GGT7Q9UJ14 662 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 SNCAIPQ9Y6H5 919 aa10.08□□□□□ -0.8
USP40-213ENST00000483216 F6X3S4 739 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 SCAMP3O14828 347 aaKnown RBP10.07□□□□□ -0.8
USP40-213ENST00000483216 GSC2O15499 205 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 PF4P02776 101 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 NFICP08651 508 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 FSTP19883 344 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 RAB6AP20340 208 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 MAP7Q14244 749 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 INPP5AQ14642 412 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 TTLL4Q14679 1199 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 RNF43Q68DV7 783 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 LRFN4Q6PJG9 635 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 PAOXQ6QHF9 649 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 HDXQ7Z353 690 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 PIDD1Q9HB75 910 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 COPRSQ9NQ92 184 aa10.07□□□□□ -0.8
USP40-213ENST00000483216 DCDC2CA8MYV0 355 aa10.06□□□□□ -0.8
USP40-213ENST00000483216 NFKBIBQ15653 356 aa10.06□□□□□ -0.8
USP40-213ENST00000483216 PRSS36Q5K4E3 855 aa10.06□□□□□ -0.8
USP40-213ENST00000483216 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.06□□□□□ -0.8
USP40-213ENST00000483216 CYFIP1Q7L576 1253 aa10.06□□□□□ -0.8
USP40-213ENST00000483216 C12orf40Q86WS4 652 aa10.06□□□□□ -0.8
USP40-213ENST00000483216 ELMO3Q96BJ8 720 aa10.06□□□□□ -0.8
USP40-213ENST00000483216 MINDY4BA8MYZ0 360 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 FANCGO15287 622 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 IGLV1-40P01703 118 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 ITGB7P26010 798 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 NFIAQ12857 509 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 PPM1JQ5JR12 505 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 DIEXFQ68CQ4 756 aaKnown RBP10.05□□□□□ -0.8
USP40-213ENST00000483216 SMYD4Q8IYR2 804 aaPredicted RBP10.05□□□□□ -0.8
USP40-213ENST00000483216 RNF34Q969K3 372 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 PLPPR2Q96GM1 343 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 CSADQ9Y600 493 aa10.05□□□□□ -0.8
USP40-213ENST00000483216 GFRA2O00451 464 aa10.04□□□□□ -0.8
USP40-213ENST00000483216 NEFMP07197 916 aa10.04□□□□□ -0.8
USP40-213ENST00000483216 HCLS1P14317 486 aaPredicted RBP10.04□□□□□ -0.8
USP40-213ENST00000483216 SEZ6L2Q6UXD5 910 aa10.04□□□□□ -0.8
USP40-213ENST00000483216 JARID2Q92833 1246 aaPredicted RBP10.04□□□□□ -0.8
USP40-213ENST00000483216 ZNF428Q96B54 188 aa10.04□□□□□ -0.8
USP40-213ENST00000483216 KCNQ5Q9NR82 932 aa10.04□□□□□ -0.8
USP40-213ENST00000483216 TACC3Q9Y6A5 838 aa10.04□□□□□ -0.8
USP40-213ENST00000483216 RNGTTO60942 597 aaKnown RBP10.03□□□□□ -0.8
USP40-213ENST00000483216 GARTP22102 1010 aa10.03□□□□□ -0.8
USP40-213ENST00000483216 NTF4P34130 210 aa10.03□□□□□ -0.8
USP40-213ENST00000483216 CDK8P49336 464 aa10.03□□□□□ -0.8
USP40-213ENST00000483216 RPL6Q02878 288 aaKnown RBP10.03□□□□□ -0.8
USP40-213ENST00000483216 WIPI1Q5MNZ9 446 aaPredicted RBP10.03□□□□□ -0.8
USP40-213ENST00000483216 ZBTB37Q5TC79 503 aa10.03□□□□□ -0.8
USP40-213ENST00000483216 BNC2Q6ZN30 1099 aaPredicted RBP10.03□□□□□ -0.8
USP40-213ENST00000483216 GATAD2BQ8WXI9 593 aa10.03□□□□□ -0.8
USP40-213ENST00000483216 DBNDD2Q9BQY9 259 aa10.03□□□□□ -0.8
USP40-213ENST00000483216 PCOLCE2Q9UKZ9 415 aa10.03□□□□□ -0.8
USP40-213ENST00000483216 DAGLAQ9Y4D2 1042 aa10.03□□□□□ -0.8
USP40-213ENST00000483216 FAM221AA4D161 298 aa10.02□□□□□ -0.81
USP40-213ENST00000483216 CILPO75339 1184 aa10.02□□□□□ -0.81
USP40-213ENST00000483216 EIF4A3P38919 411 aaKnown RBP10.02□□□□□ -0.81
USP40-213ENST00000483216 SNAP47Q5SQN1 464 aa10.02□□□□□ -0.81
USP40-213ENST00000483216 ISL2Q96A47 359 aa10.02□□□□□ -0.81
USP40-213ENST00000483216 PICK1Q9NRD5 415 aa10.02□□□□□ -0.81
USP40-213ENST00000483216 PRKAG2Q9UGJ0 569 aa10.02□□□□□ -0.81
USP40-213ENST00000483216 F13A1P00488 732 aa10.01□□□□□ -0.81
USP40-213ENST00000483216 FAM160A1Q05DH4 1040 aa10.01□□□□□ -0.81
USP40-213ENST00000483216 GOLM1Q8NBJ4 401 aa10.01□□□□□ -0.81
USP40-213ENST00000483216 C1GALT1Q9NS00 363 aa10.01□□□□□ -0.81
USP40-213ENST00000483216 PRAMEF27A3QJZ7 478 aa10□□□□□ -0.81
USP40-213ENST00000483216 GREM1O60565 184 aa10□□□□□ -0.81
USP40-213ENST00000483216 RBM25P49756 843 aaKnown RBP10□□□□□ -0.81
USP40-213ENST00000483216 FBXL19Q6PCT2 694 aa10□□□□□ -0.81
USP40-213ENST00000483216 KCT2Q8NC54 265 aa10□□□□□ -0.81
USP40-213ENST00000483216 WNT10AQ9GZT5 417 aa10□□□□□ -0.81
USP40-213ENST00000483216 SSU72Q9NP77 194 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms