RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 ZNF280AP59817 542 aaPredicted RBP9.82□□□□□ -0.84
USP4-210ENST00000483212 HAND2P61296 217 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 IMMTQ16891 758 aaKnown RBP9.82□□□□□ -0.84
USP4-210ENST00000483212 CFAP100Q494V2 611 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 SBK1Q52WX2 424 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 CTR9Q6PD62 1173 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 TEX11Q8IYF3 940 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 NKX2-3Q8TAU0 364 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 DPF2Q92785 391 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 TTC14Q96N46 770 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 NACAP1Q9BZK3 213 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 NAPBQ9H115 298 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 ZSWIM6Q9HCJ5 1215 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 DDX4Q9NQI0 724 aaKnown RBP9.82□□□□□ -0.84
USP4-210ENST00000483212 ANAPC4Q9UJX5 808 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 ROBO3Q96MS0 1386 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 ECM29Q5VYK3 1845 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 FLT1P17948 1338 aa9.82□□□□□ -0.84
USP4-210ENST00000483212 SPDYE2BA6NHP3 402 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 E7EWF7 191 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 ZNF213O14771 459 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 USP17L8P0C7I0 530 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 SPDYE6P0CI01 402 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 CYP2D6P10635 497 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 TDO2P48775 406 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 GMPSP49915 693 aaPredicted RBP9.81□□□□□ -0.84
USP4-210ENST00000483212 MMP14P50281 582 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 PPARAQ07869 468 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 KRT32Q14532 448 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 MAPKAPK5Q8IW41 473 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 TGFBRAP1Q8WUH2 860 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 SNX21Q969T3 373 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 PRMT6Q96LA8 375 aaPredicted RBP9.81□□□□□ -0.84
USP4-210ENST00000483212 JAKMIP1Q96N16 626 aaKnown RBP9.81□□□□□ -0.84
USP4-210ENST00000483212 NOL10Q9BSC4 688 aaKnown RBP9.81□□□□□ -0.84
USP4-210ENST00000483212 IDI2Q9BXS1 227 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 UPF3BQ9BZI7 483 aaKnown RBP9.81□□□□□ -0.84
USP4-210ENST00000483212 USP40Q9NVE5 1235 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 RNF181Q9P0P0 153 aa9.81□□□□□ -0.84
USP4-210ENST00000483212 BAZ2AQ9UIF9 1905 aaKnown RBP9.8□□□□□ -0.84
USP4-210ENST00000483212 CYP2D7A0A087X1C5 515 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 USP17L12C9JPN9 530 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 USP17L21D6R901 530 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 FGRP09769 529 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 CPA1P15085 419 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 ANP32AP39687 249 aaKnown RBP9.8□□□□□ -0.84
USP4-210ENST00000483212 USP5P45974 858 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 EXOSC10Q01780 885 aaKnown RBP9.8□□□□□ -0.84
USP4-210ENST00000483212 CTDSPL2Q05D32 466 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 NFIAQ12857 509 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 GPR162Q16538 588 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 C12orf60Q5U649 245 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 C9orf131Q5VYM1 1079 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 MB21D2Q8IYB1 491 aaPredicted RBP9.8□□□□□ -0.84
USP4-210ENST00000483212 GPC2Q8N158 579 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 STAG1Q8WVM7 1258 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 TBC1D2Q9BYX2 928 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 ARPP21Q9UBL0 812 aaPredicted RBP9.8□□□□□ -0.84
USP4-210ENST00000483212 FAM198AQ9UFP1 575 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 HDAC9Q9UKV0 1011 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP4-210ENST00000483212 NEDD4P46934 1319 aa9.8□□□□□ -0.84
USP4-210ENST00000483212 COL2A1P02458 1487 aaPredicted RBP9.79□□□□□ -0.84
USP4-210ENST00000483212 GRIN3BO60391 1043 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 EGFRP00533 1210 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 CASTP20810 708 aaKnown RBP9.79□□□□□ -0.84
USP4-210ENST00000483212 RPS6KB1P23443 525 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 NEK4P51957 841 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 SPDYE2Q495Y8 402 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 AKNAD1Q5T1N1 836 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 RUFY3Q7L099 469 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 IL27Q8NEV9 243 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 NEK1Q96PY6 1258 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 OSBPL5Q9H0X9 879 aaPredicted RBP9.79□□□□□ -0.84
USP4-210ENST00000483212 ALDH8A1Q9H2A2 487 aaPredicted RBP9.79□□□□□ -0.84
USP4-210ENST00000483212 TDRD3Q9H7E2 651 aaKnown RBP9.79□□□□□ -0.84
USP4-210ENST00000483212 MYOZ2Q9NPC6 264 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 INCENPQ9NQS7 918 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 MCM9Q9NXL9 1143 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 GJA3Q9Y6H8 435 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 SIPA1L1O43166 1804 aa9.79□□□□□ -0.84
USP4-210ENST00000483212 MINDY4BA8MYZ0 360 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 WNT10BO00744 389 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 PSMA5P28066 241 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 PLCD1P51178 756 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 RBM5P52756 815 aaKnown RBP eCLIP9.78□□□□□ -0.84
USP4-210ENST00000483212 CACNB3P54284 484 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 ANTXR2P58335 489 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 DLGAP5Q15398 846 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 BLOC1S2Q6QNY1 142 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 SH3BP5LQ7L8J4 393 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 ZFPM1Q8IX07 1006 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 MICALL2Q8IY33 904 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 OGFOD1Q8N543 542 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 AGXT2Q9BYV1 514 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 GPRC5DQ9NZD1 345 aa9.78□□□□□ -0.84
USP4-210ENST00000483212 ZNF70Q9UC06 446 aaPredicted RBP9.78□□□□□ -0.84
USP4-210ENST00000483212 SAP30BPQ9UHR5 308 aaKnown RBP9.78□□□□□ -0.84
USP4-210ENST00000483212 CNOT7Q9UIV1 285 aaKnown RBP9.78□□□□□ -0.84
USP4-210ENST00000483212 CYP46A1Q9Y6A2 500 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms