RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 GPAA1O43292 621 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 PPP1R12BO60237 982 aaPredicted RBP9.89□□□□□ -0.83
USP54-212ENST00000480210 TBC1D12O60347 775 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 HLA-DOAP06340 250 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 POTEIP0CG38 1075 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 POTEJP0CG39 1038 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 MIGA1Q8NAN2 632 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 SH3RF3Q8TEJ3 882 aaPredicted RBP9.89□□□□□ -0.83
USP54-212ENST00000480210 TGFBRAP1Q8WUH2 860 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 UBE2Q2Q8WVN8 375 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 OSBPL5Q9H0X9 879 aaPredicted RBP9.89□□□□□ -0.83
USP54-212ENST00000480210 PI4KBQ9UBF8 816 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 FAM198AQ9UFP1 575 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 SLC4A4Q9Y6R1 1079 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 NAV1Q8NEY1 1877 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 ATRNL1Q5VV63 1379 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 MBD4O95243 580 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 CHMLP26374 656 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 NT5C2P49902 561 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 DYNLL1P63167 89 aaKnown RBP9.88□□□□□ -0.83
USP54-212ENST00000480210 MAP3K10Q02779 954 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 ALX1Q15699 326 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 MAP3K11Q16584 847 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 ARMC9Q7Z3E5 817 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 ZSCAN29Q8IWY8 852 aaPredicted RBP9.88□□□□□ -0.83
USP54-212ENST00000480210 C2orf69Q8N8R5 385 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 CDCA5Q96FF9 252 aa9.88□□□□□ -0.83
USP54-212ENST00000480210 GLIS2Q9BZE0 524 aaPredicted RBP9.88□□□□□ -0.83
USP54-212ENST00000480210 HERC5Q9UII4 1024 aaKnown RBP9.88□□□□□ -0.83
USP54-212ENST00000480210 ASTN2O75129 1339 aaPredicted RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 FLT1P17948 1338 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 CCDC171Q6TFL3 1326 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 TMEM88BA6NKF7 163 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 EPB41L2O43491 1005 aaKnown RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 CDC45O75419 566 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 POLR3DP05423 398 aaPredicted RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 IREB2P48200 963 aaKnown RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 APLP1P51693 650 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 NFIAQ12857 509 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 NMIQ13287 307 aaPredicted RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 PICALMQ13492 652 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 SBK1Q52WX2 424 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 CWC27Q6UX04 472 aaKnown RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 METTL16Q86W50 562 aaKnown RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 LCORLQ8N3X6 602 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 HHIPL1Q96JK4 782 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 TEPSINQ96N21 525 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 EHD4Q9H223 541 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 ARMT1Q9H993 441 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 ZNF287Q9HBT7 754 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 DCP1AQ9NPI6 582 aaPredicted RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 GINM1Q9NU53 330 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 ARPP21Q9UBL0 812 aaPredicted RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 MKRN1Q9UHC7 482 aaKnown RBP9.87□□□□□ -0.83
USP54-212ENST00000480210 CNTNAP1P78357 1384 aa9.87□□□□□ -0.83
USP54-212ENST00000480210 ZMYM6O95789 1325 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 PAPPA2Q9BXP8 1791 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 ADM5C9JUS6 153 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 APPP05067 770 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 SLC3A2P08195 630 aaKnown RBP9.86□□□□□ -0.83
USP54-212ENST00000480210 C1QTNF8P60827 252 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 TCP10Q12799 353 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 KIAA1211Q6ZU35 1233 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 MAPKAPK5Q8IW41 473 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 IFNL3Q8IZI9 196 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 FAM227BQ96M60 508 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 CSRNP1Q96S65 589 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 DSCC1Q9BVC3 393 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 TRIM34Q9BYJ4 488 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 ZNF341Q9BYN7 854 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 TMEM39BQ9GZU3 492 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 GBA2Q9HCG7 927 aaPredicted RBP9.86□□□□□ -0.83
USP54-212ENST00000480210 DDX4Q9NQI0 724 aaKnown RBP9.86□□□□□ -0.83
USP54-212ENST00000480210 MCM9Q9NXL9 1143 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 SWAP70Q9UH65 585 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 CTNNA3Q9UI47 895 aa9.86□□□□□ -0.83
USP54-212ENST00000480210 A0A0D9SFI3 127 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 GSG1L2A8MUP6 293 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 M0R2C6 588 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 SGSM2O43147 1006 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 CELF2O95319 508 aaKnown RBP9.85□□□□□ -0.83
USP54-212ENST00000480210 HSPD1P10809 573 aaKnown RBP9.85□□□□□ -0.83
USP54-212ENST00000480210 PCP11498 1178 aaKnown RBP9.85□□□□□ -0.83
USP54-212ENST00000480210 DEKP35659 375 aaKnown RBP9.85□□□□□ -0.83
USP54-212ENST00000480210 TDO2P48775 406 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 CACNB3P54284 484 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 NBPF12Q5TAG4 269 aaPredicted RBP9.85□□□□□ -0.83
USP54-212ENST00000480210 SEC62Q99442 399 aaKnown RBP9.85□□□□□ -0.83
USP54-212ENST00000480210 TBC1D2Q9BYX2 928 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 NAPBQ9H115 298 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 CREBZFQ9NS37 354 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 SERPINB13Q9UIV8 391 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 LAMB1P07942 1786 aa9.85□□□□□ -0.83
USP54-212ENST00000480210 DDTLA6NHG4 134 aaPredicted RBP9.84□□□□□ -0.83
USP54-212ENST00000480210 USP2O75604 605 aaPredicted RBP9.84□□□□□ -0.83
USP54-212ENST00000480210 MAP3K9P80192 1104 aa9.84□□□□□ -0.83
USP54-212ENST00000480210 TTLL12Q14166 644 aaPredicted RBP9.84□□□□□ -0.83
USP54-212ENST00000480210 SLFNL1Q499Z3 407 aa9.84□□□□□ -0.83
USP54-212ENST00000480210 C12orf60Q5U649 245 aa9.84□□□□□ -0.83
USP54-212ENST00000480210 ANKRD13AQ8IZ07 590 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms