RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 CDKL5O76039 1030 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 SART3Q15020 963 aaKnown RBP14.29□□□□□ -0.12
SYNE1-222ENST00000474655 FLAD1Q8NFF5 587 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 RBSNQ9H1K0 784 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 TFIP11Q9UBB9 837 aaKnown RBP14.29□□□□□ -0.12
SYNE1-222ENST00000474655 CDK5RAP2Q96SN8 1893 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 IL1R1P14778 569 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 CDC27P30260 824 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 NASPP49321 788 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-222ENST00000474655 CHAF1AQ13111 956 aaPredicted RBP14.29□□□□□ -0.12
SYNE1-222ENST00000474655 SBK1Q52WX2 424 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 CTR9Q6PD62 1173 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 SLC51AQ86UW1 340 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 CRNKL1Q9BZJ0 848 aaKnown RBP14.29□□□□□ -0.12
SYNE1-222ENST00000474655 RCOR1Q9UKL0 485 aa14.29□□□□□ -0.12
SYNE1-222ENST00000474655 STK36Q9NRP7 1315 aa14.28□□□□□ -0.12
SYNE1-222ENST00000474655 APBA3O96018 575 aa14.28□□□□□ -0.12
SYNE1-222ENST00000474655 SEC23AQ15436 765 aa14.28□□□□□ -0.12
SYNE1-222ENST00000474655 CPLX2Q6PUV4 134 aaKnown RBP14.28□□□□□ -0.12
SYNE1-222ENST00000474655 ILDR1Q86SU0 546 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-222ENST00000474655 COL23A1Q86Y22 540 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-222ENST00000474655 ESR2Q92731 530 aa14.28□□□□□ -0.12
SYNE1-222ENST00000474655 C8orf76Q96K31 380 aa14.28□□□□□ -0.12
SYNE1-222ENST00000474655 DCP1AQ9NPI6 582 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-222ENST00000474655 SLC12A7Q9Y666 1083 aa14.28□□□□□ -0.12
SYNE1-222ENST00000474655 CCDC69A6NI79 296 aa14.27□□□□□ -0.12
SYNE1-222ENST00000474655 MINDY4BA8MYZ0 360 aa14.27□□□□□ -0.12
SYNE1-222ENST00000474655 SP8Q8IXZ3 490 aa14.27□□□□□ -0.12
SYNE1-222ENST00000474655 PGBD1Q96JS3 809 aa14.27□□□□□ -0.12
SYNE1-222ENST00000474655 CD209Q9NNX6 404 aa14.27□□□□□ -0.12
SYNE1-222ENST00000474655 AATFQ9NY61 560 aaKnown RBP eCLIP14.27□□□□□ -0.12
SYNE1-222ENST00000474655 MKRN1Q9UHC7 482 aaKnown RBP14.27□□□□□ -0.12
SYNE1-222ENST00000474655 GGA1Q9UJY5 639 aa14.27□□□□□ -0.12
SYNE1-222ENST00000474655 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.27□□□□□ -0.12
SYNE1-222ENST00000474655 MYH6P13533 1939 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 ORC4O43929 436 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 UFL1O94874 794 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 LDHBP07195 334 aaKnown RBP14.27□□□□□ -0.13
SYNE1-222ENST00000474655 NT5C2P49902 561 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 PPP4CP60510 307 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 WTAPQ15007 396 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 PPP2R5BQ15173 497 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 NFXL1Q6ZNB6 911 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 BRAPQ7Z569 592 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 MICU3Q86XE3 530 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 RAB11FIP4Q86YS3 637 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 ZNF396Q96N95 335 aaPredicted RBP14.27□□□□□ -0.13
SYNE1-222ENST00000474655 TSPY26PQ9H489 355 aa14.27□□□□□ -0.13
SYNE1-222ENST00000474655 COL11A2P13942 1736 aaPredicted RBP14.26□□□□□ -0.13
SYNE1-222ENST00000474655 ERICH2A1L162 156 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 GOLGA8AA7E2F4 631 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 USP17L12C9JPN9 530 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 USP17L21D6R901 530 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 IFNAR1P17181 557 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 RXRBP28702 533 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 GSTO1P78417 241 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 RRP12Q5JTH9 1297 aaKnown RBP14.26□□□□□ -0.13
SYNE1-222ENST00000474655 DZIP1Q86YF9 867 aaKnown RBP14.26□□□□□ -0.13
SYNE1-222ENST00000474655 TBC1D16Q8TBP0 767 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 PPP1R9BQ96SB3 815 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 ARPP21Q9UBL0 812 aaPredicted RBP14.26□□□□□ -0.13
SYNE1-222ENST00000474655 POLLQ9UGP5 575 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 QSER1Q2KHR3 1735 aa14.26□□□□□ -0.13
SYNE1-222ENST00000474655 NAV1Q8NEY1 1877 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 SMIM22K7EJ46 135 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 PPFIA3O75145 1194 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 SRGNP10124 158 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 SYNE3Q6ZMZ3 975 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 CERS3Q8IU89 383 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 FUCA2Q9BTY2 467 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 TOMM22Q9NS69 142 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 FOCADQ5VW36 1801 aa14.25□□□□□ -0.13
SYNE1-222ENST00000474655 DDX60LQ5H9U9 1706 aaKnown RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 RANBP6O60518 1105 aaKnown RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 LIG1P18858 919 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 RXRAP19793 462 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 IARSP41252 1262 aaKnown RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 GUCY1B3Q02153 619 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 USP28Q96RU2 1077 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 UBAC1Q9BSL1 405 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 RTEL1Q9NZ71 1219 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 ATP6V0A2Q9Y487 856 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 TNKSO95271 1327 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 CYP2D7A0A087X1C5 515 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 CCDC196A0A1B0GTZ2 297 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 GOLGA6L4A6NEF3 574 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 FMNL1O95466 1100 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 LDHCP07864 332 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 NPR1P16066 1061 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 FOSBP53539 338 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 KIF23Q02241 960 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 CCDC173Q0VFZ6 552 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 RBM43Q6ZSC3 357 aaKnown RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 ZNF654Q8IZM8 581 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 ENAHQ8N8S7 591 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 FAM163AQ96GL9 167 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 GPR101Q96P66 508 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 ZSCAN10Q96SZ4 725 aaPredicted RBP14.24□□□□□ -0.13
SYNE1-222ENST00000474655 ZKSCAN3Q9BRR0 538 aa14.24□□□□□ -0.13
SYNE1-222ENST00000474655 ALG1Q9BT22 464 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms