RNA–Protein interactions for RNA: ENST00000474391.1

COL4A1-203, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 2

Gene COL4A1, Length 581 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-203ENST00000474391 PTPN18Q99952 460 aa12.89□□□□□ -0.35
COL4A1-203ENST00000474391 IL1RAPL2Q9NP60 686 aa12.89□□□□□ -0.35
COL4A1-203ENST00000474391 COL2A1P02458 1487 aaPredicted RBP12.89□□□□□ -0.35
COL4A1-203ENST00000474391 MAST2Q6P0Q8 1798 aa12.89□□□□□ -0.35
COL4A1-203ENST00000474391 CASP8AP2Q9UKL3 1982 aa12.89□□□□□ -0.35
COL4A1-203ENST00000474391 INPP5BP32019 993 aa12.88□□□□□ -0.35
COL4A1-203ENST00000474391 PPP4CP60510 307 aa12.88□□□□□ -0.35
COL4A1-203ENST00000474391 NOL9Q5SY16 702 aaKnown RBP12.88□□□□□ -0.35
COL4A1-203ENST00000474391 NAA16Q6N069 864 aaPredicted RBP12.88□□□□□ -0.35
COL4A1-203ENST00000474391 CLASRPQ8N2M8 674 aaKnown RBP12.88□□□□□ -0.35
COL4A1-203ENST00000474391 OTUD5Q96G74 571 aa12.88□□□□□ -0.35
COL4A1-203ENST00000474391 ABHD8Q96I13 439 aa12.88□□□□□ -0.35
COL4A1-203ENST00000474391 PIH1D3Q9NQM4 214 aaKnown RBP12.88□□□□□ -0.35
COL4A1-203ENST00000474391 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.88□□□□□ -0.35
COL4A1-203ENST00000474391 DDTLA6NHG4 134 aaPredicted RBP12.87□□□□□ -0.35
COL4A1-203ENST00000474391 PHF20L1A8MW92 1017 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 GPR25O00155 361 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 GTF2A2P52657 109 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 PPATQ06203 517 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 PPIL2Q13356 520 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 PICALMQ13492 652 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 OTUD7BQ6GQQ9 843 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 TMED8Q6PL24 325 aaPredicted RBP12.87□□□□□ -0.35
COL4A1-203ENST00000474391 ADGRA1Q86SQ6 560 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.87□□□□□ -0.35
COL4A1-203ENST00000474391 ZNF296Q8WUU4 475 aaPredicted RBP12.87□□□□□ -0.35
COL4A1-203ENST00000474391 BRI3BPQ8WY22 251 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 MCOLN1Q9GZU1 580 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 R3HDMLQ9H3Y0 253 aa12.87□□□□□ -0.35
COL4A1-203ENST00000474391 DOCK2Q92608 1830 aa12.86□□□□□ -0.35
COL4A1-203ENST00000474391 IRF6O14896 467 aa12.86□□□□□ -0.35
COL4A1-203ENST00000474391 TBC1D12O60347 775 aa12.86□□□□□ -0.35
COL4A1-203ENST00000474391 BAG3O95817 575 aa12.86□□□□□ -0.35
COL4A1-203ENST00000474391 DGKZQ13574 1117 aa12.86□□□□□ -0.35
COL4A1-203ENST00000474391 SH3RF3Q8TEJ3 882 aaPredicted RBP12.86□□□□□ -0.35
COL4A1-203ENST00000474391 ANTXR1Q9H6X2 564 aa12.86□□□□□ -0.35
COL4A1-203ENST00000474391 CCL15-CCL14A0A0B4J2E2 113 aa12.85□□□□□ -0.35
COL4A1-203ENST00000474391 APBB1O00213 710 aa12.85□□□□□ -0.35
COL4A1-203ENST00000474391 CAPN15O75808 1086 aa12.85□□□□□ -0.35
COL4A1-203ENST00000474391 PLCG2P16885 1265 aa12.85□□□□□ -0.35
COL4A1-203ENST00000474391 RRP1P56182 461 aaKnown RBP12.85□□□□□ -0.35
COL4A1-203ENST00000474391 CCL15Q16663 113 aa12.85□□□□□ -0.35
COL4A1-203ENST00000474391 CTU1Q7Z7A3 348 aaKnown RBP12.85□□□□□ -0.35
COL4A1-203ENST00000474391 ZSCAN29Q8IWY8 852 aaPredicted RBP12.85□□□□□ -0.35
COL4A1-203ENST00000474391 TEX11Q8IYF3 940 aa12.85□□□□□ -0.35
COL4A1-203ENST00000474391 NOL10Q9BSC4 688 aaKnown RBP12.85□□□□□ -0.35
COL4A1-203ENST00000474391 OSBPL5Q9H0X9 879 aaPredicted RBP12.85□□□□□ -0.35
COL4A1-203ENST00000474391 AATFQ9NY61 560 aaKnown RBP eCLIP12.85□□□□□ -0.35
COL4A1-203ENST00000474391 KCNH4Q9UQ05 1017 aa12.85□□□□□ -0.35
COL4A1-203ENST00000474391 NDUFB9Q9Y6M9 179 aa12.85□□□□□ -0.35
COL4A1-203ENST00000474391 FKTNO75072 461 aa12.84□□□□□ -0.35
COL4A1-203ENST00000474391 IDH1O75874 414 aaKnown RBP12.84□□□□□ -0.35
COL4A1-203ENST00000474391 IFIT2P09913 472 aaKnown RBP12.84□□□□□ -0.35
COL4A1-203ENST00000474391 CETPP11597 493 aa12.84□□□□□ -0.35
COL4A1-203ENST00000474391 CRHR2Q13324 411 aa12.84□□□□□ -0.35
COL4A1-203ENST00000474391 SNAPC2Q13487 334 aa12.84□□□□□ -0.35
COL4A1-203ENST00000474391 SCYL3Q8IZE3 742 aa12.84□□□□□ -0.35
COL4A1-203ENST00000474391 ZCCHC17Q9NP64 241 aaKnown RBP12.84□□□□□ -0.35
COL4A1-203ENST00000474391 MYO5AQ9Y4I1 1855 aaKnown RBP12.83□□□□□ -0.36
COL4A1-203ENST00000474391 CTNND1O60716 968 aaKnown RBP12.83□□□□□ -0.36
COL4A1-203ENST00000474391 SLURP2P0DP57 97 aa12.83□□□□□ -0.36
COL4A1-203ENST00000474391 CYP7A1P22680 504 aa12.83□□□□□ -0.36
COL4A1-203ENST00000474391 MAP3K12Q12852 859 aa12.83□□□□□ -0.36
COL4A1-203ENST00000474391 TTF1Q15361 905 aaPredicted RBP12.83□□□□□ -0.36
COL4A1-203ENST00000474391 CERS3Q8IU89 383 aa12.83□□□□□ -0.36
COL4A1-203ENST00000474391 FAM43AQ8N2R8 423 aa12.83□□□□□ -0.36
COL4A1-203ENST00000474391 YTHDC1Q96MU7 727 aaKnown RBP12.83□□□□□ -0.36
COL4A1-203ENST00000474391 LRRCC1Q9C099 1032 aa12.83□□□□□ -0.36
COL4A1-203ENST00000474391 DHX36Q9H2U1 1008 aaKnown RBP12.83□□□□□ -0.36
COL4A1-203ENST00000474391 DCTPP1Q9H773 170 aa12.83□□□□□ -0.36
COL4A1-203ENST00000474391 FLT1P17948 1338 aa12.83□□□□□ -0.36
COL4A1-203ENST00000474391 AK9Q5TCS8 1911 aa12.82□□□□□ -0.36
COL4A1-203ENST00000474391 CXCL11O14625 94 aa12.82□□□□□ -0.36
COL4A1-203ENST00000474391 PTPRAP18433 802 aa12.82□□□□□ -0.36
COL4A1-203ENST00000474391 ATP5JP18859 108 aa12.82□□□□□ -0.36
COL4A1-203ENST00000474391 MOGSQ13724 837 aa12.82□□□□□ -0.36
COL4A1-203ENST00000474391 PKN2Q16513 984 aaKnown RBP12.82□□□□□ -0.36
COL4A1-203ENST00000474391 METTL16Q86W50 562 aaKnown RBP12.82□□□□□ -0.36
COL4A1-203ENST00000474391 MAGEB6Q8N7X4 407 aa12.82□□□□□ -0.36
COL4A1-203ENST00000474391 TGFBRAP1Q8WUH2 860 aa12.82□□□□□ -0.36
COL4A1-203ENST00000474391 PI4KBQ9UBF8 816 aa12.82□□□□□ -0.36
COL4A1-203ENST00000474391 FOCADQ5VW36 1801 aa12.81□□□□□ -0.36
COL4A1-203ENST00000474391 BTBD19C9JJ37 291 aa12.81□□□□□ -0.36
COL4A1-203ENST00000474391 DYNLL1P63167 89 aaKnown RBP12.81□□□□□ -0.36
COL4A1-203ENST00000474391 RIOK1Q9BRS2 568 aaKnown RBP12.81□□□□□ -0.36
COL4A1-203ENST00000474391 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.81□□□□□ -0.36
COL4A1-203ENST00000474391 PICK1Q9NRD5 415 aa12.81□□□□□ -0.36
COL4A1-203ENST00000474391 HERC5Q9UII4 1024 aaKnown RBP12.81□□□□□ -0.36
COL4A1-203ENST00000474391 AFG3L2Q9Y4W6 797 aa12.81□□□□□ -0.36
COL4A1-203ENST00000474391 PCDHB15Q9Y5E8 787 aa12.81□□□□□ -0.36
COL4A1-203ENST00000474391 FAM196BA6NMK8 535 aa12.8□□□□□ -0.36
COL4A1-203ENST00000474391 GOLIM4O00461 696 aa12.8□□□□□ -0.36
COL4A1-203ENST00000474391 PDE6AP16499 860 aa12.8□□□□□ -0.36
COL4A1-203ENST00000474391 TAF1CQ15572 869 aaPredicted RBP12.8□□□□□ -0.36
COL4A1-203ENST00000474391 ANKRD23Q86SG2 305 aa12.8□□□□□ -0.36
COL4A1-203ENST00000474391 MAPKAPK5Q8IW41 473 aa12.8□□□□□ -0.36
COL4A1-203ENST00000474391 MIGA1Q8NAN2 632 aa12.8□□□□□ -0.36
COL4A1-203ENST00000474391 HAUS7Q99871 368 aa12.8□□□□□ -0.36
COL4A1-203ENST00000474391 ZFYVE28Q9HCC9 887 aa12.8□□□□□ -0.36
COL4A1-203ENST00000474391 ZHX2Q9Y6X8 837 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms