RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	ERO1B	Q86YB8	467 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	CLASRP	Q8N2M8	674 aa	Known RBP	13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	KIF1BP	Q96EK5	621 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	OTUD5	Q96G74	571 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	ABHD8	Q96I13	439 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	MCOLN1	Q9GZU1	580 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	DDX4	Q9NQI0	724 aa	Known RBP	13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	GPR25	O00155	361 aa		13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	INPP5B	P32019	993 aa		13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	GTF2A2	P52657	109 aa		13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	PICALM	Q13492	652 aa		13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	SH3BP5L	Q7L8J4	393 aa		13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	PTPN18	Q99952	460 aa		13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	NOL10	Q9BSC4	688 aa	Known RBP	13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	R3HDML	Q9H3Y0	253 aa		13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	PIH1D3	Q9NQM4	214 aa	Known RBP	13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	RFX7	Q2KHR2	1363 aa		13.67	□□□□□ -0.22
CKS1B-206	ENST00000474215	MYH2	Q9UKX2	1941 aa		13.66	□□□□□ -0.22
CKS1B-206	ENST00000474215	CASP8AP2	Q9UKL3	1982 aa		13.66	□□□□□ -0.22
CKS1B-206	ENST00000474215	DDTL	A6NHG4	134 aa	Predicted RBP	13.66	□□□□□ -0.22
CKS1B-206	ENST00000474215	BAG3	O95817	575 aa		13.66	□□□□□ -0.22
CKS1B-206	ENST00000474215	PPP4C	P60510	307 aa		13.66	□□□□□ -0.22
CKS1B-206	ENST00000474215	MAP3K10	Q02779	954 aa		13.66	□□□□□ -0.22
CKS1B-206	ENST00000474215	PPAT	Q06203	517 aa		13.66	□□□□□ -0.22
CKS1B-206	ENST00000474215	BRI3BP	Q8WY22	251 aa		13.66	□□□□□ -0.22
CKS1B-206	ENST00000474215	CCL15-CCL14	A0A0B4J2E2	113 aa		13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	PHF20L1	A8MW92	1017 aa		13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	IFIT2	P09913	472 aa	Known RBP	13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	CETP	P11597	493 aa		13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	PLCG2	P16885	1265 aa		13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	PPIL2	Q13356	520 aa		13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	CCL15	Q16663	113 aa		13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	CTU1	Q7Z7A3	348 aa	Known RBP	13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	TEX11	Q8IYF3	940 aa		13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	YTHDC1	Q96MU7	727 aa	Known RBP	13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	ATRNL1	Q5VV63	1379 aa		13.65	□□□□□ -0.22
CKS1B-206	ENST00000474215	OTOF	Q9HC10	1997 aa		13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	IRF6	O14896	467 aa		13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	FKTN	O75072	461 aa		13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	IDH1	O75874	414 aa	Known RBP	13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	SNAPC2	Q13487	334 aa		13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	NOL9	Q5SY16	702 aa	Known RBP	13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	ADGRA1	Q86SQ6	560 aa		13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	BCL11A	Q9H165	835 aa		13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	NDUFB9	Q9Y6M9	179 aa		13.64	□□□□□ -0.23
CKS1B-206	ENST00000474215	TBC1D12	O60347	775 aa		13.63	□□□□□ -0.23
CKS1B-206	ENST00000474215	CYP7A1	P22680	504 aa		13.63	□□□□□ -0.23
CKS1B-206	ENST00000474215	MAP3K12	Q12852	859 aa		13.63	□□□□□ -0.23
CKS1B-206	ENST00000474215	CRHR2	Q13324	411 aa		13.63	□□□□□ -0.23
CKS1B-206	ENST00000474215	TMED8	Q6PL24	325 aa	Predicted RBP	13.63	□□□□□ -0.23
CKS1B-206	ENST00000474215	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.63	□□□□□ -0.23
CKS1B-206	ENST00000474215	ANTXR1	Q9H6X2	564 aa		13.63	□□□□□ -0.23
CKS1B-206	ENST00000474215	CCDC85C	A6NKD9	419 aa		13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	CTNND1	O60716	968 aa	Known RBP	13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	SLURP2	P0DP57	97 aa		13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	TTF1	Q15361	905 aa	Predicted RBP	13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	SCYL3	Q8IZE3	742 aa		13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	FAM43A	Q8N2R8	423 aa		13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	MAGEB6	Q8N7X4	407 aa		13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	LRRCC1	Q9C099	1032 aa		13.62	□□□□□ -0.23
CKS1B-206	ENST00000474215	RRP1	P56182	461 aa	Known RBP	13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	TAF1C	Q15572	869 aa	Predicted RBP	13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	PKN2	Q16513	984 aa	Known RBP	13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	CERS3	Q8IU89	383 aa		13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	TGFBRAP1	Q8WUH2	860 aa		13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	DHX36	Q9H2U1	1008 aa	Known RBP	13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	DCTPP1	Q9H773	170 aa		13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	ZFYVE28	Q9HCC9	887 aa		13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	ZCCHC17	Q9NP64	241 aa	Known RBP	13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	PICK1	Q9NRD5	415 aa		13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	PI4KB	Q9UBF8	816 aa		13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	KCNH4	Q9UQ05	1017 aa		13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	COL2A1	P02458	1487 aa	Predicted RBP	13.61	□□□□□ -0.23
CKS1B-206	ENST00000474215	LAMB1	P07942	1786 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	AK9	Q5TCS8	1911 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	BTBD19	C9JJ37	291 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	CXCL11	O14625	94 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	PTPRA	P18433	802 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	ATP5J	P18859	108 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	DYNLL1	P63167	89 aa	Known RBP	13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	MAPKAPK5	Q8IW41	473 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	MIGA1	Q8NAN2	632 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	ZHX2	Q9Y6X8	837 aa		13.6	□□□□□ -0.23
CKS1B-206	ENST00000474215	FAM196B	A6NMK8	535 aa		13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	GOLIM4	O00461	696 aa		13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	SP3	Q02447	781 aa		13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	SLC9C2	Q5TAH2	1124 aa		13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	ANKRD23	Q86SG2	305 aa		13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	DNAJC2	Q99543	621 aa	Known RBP	13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	HERC5	Q9UII4	1024 aa	Known RBP	13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	FLT1	P17948	1338 aa		13.59	□□□□□ -0.23
CKS1B-206	ENST00000474215	SMARCA5	O60264	1052 aa	Predicted RBP	13.58	□□□□□ -0.24
CKS1B-206	ENST00000474215	MOGS	Q13724	837 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms