RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 NTF4P34130 210 aa7.33□□□□□ -1.24
CCDC88A-212ENST00000474059 IFI16Q16666 785 aaKnown RBP7.33□□□□□ -1.24
CCDC88A-212ENST00000474059 PI16Q6UXB8 463 aa7.33□□□□□ -1.24
CCDC88A-212ENST00000474059 PIDD1Q9HB75 910 aa7.33□□□□□ -1.24
CCDC88A-212ENST00000474059 CACNA2D2Q9NY47 1150 aa7.33□□□□□ -1.24
CCDC88A-212ENST00000474059 DBX1A6NMT0 343 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 AOC3Q16853 763 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 FBLN7Q53RD9 439 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 ZC3H12AQ5D1E8 599 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 MPRIPQ6WCQ1 1025 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 UBE3DQ7Z6J8 389 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 GLYCTKQ8IVS8 523 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 TMEM40Q8WWA1 233 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 NIF3L1Q9GZT8 377 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 DNAJC25Q9H1X3 360 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 PRDM7Q9NQW5 492 aa7.32□□□□□ -1.24
CCDC88A-212ENST00000474059 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.31□□□□□ -1.24
CCDC88A-212ENST00000474059 NDUFB5O43674 189 aa7.31□□□□□ -1.24
CCDC88A-212ENST00000474059 SLFN14P0C7P3 912 aa7.31□□□□□ -1.24
CCDC88A-212ENST00000474059 TOP6BLQ8N6T0 577 aa7.31□□□□□ -1.24
CCDC88A-212ENST00000474059 FARP2O94887 1054 aaPredicted RBP7.3□□□□□ -1.24
CCDC88A-212ENST00000474059 NEFLP07196 543 aa7.3□□□□□ -1.24
CCDC88A-212ENST00000474059 ZNF252P-AS1Q0IIN9 211 aa7.3□□□□□ -1.24
CCDC88A-212ENST00000474059 FLAD1Q8NFF5 587 aa7.3□□□□□ -1.24
CCDC88A-212ENST00000474059 PI4K2BQ8TCG2 481 aa7.3□□□□□ -1.24
CCDC88A-212ENST00000474059 HRASLS5Q96KN8 279 aa7.3□□□□□ -1.24
CCDC88A-212ENST00000474059 CSRNP1Q96S65 589 aa7.3□□□□□ -1.24
CCDC88A-212ENST00000474059 PCOLCE2Q9UKZ9 415 aa7.3□□□□□ -1.24
CCDC88A-212ENST00000474059 ZNF503-AS2A6NEH8 195 aa7.29□□□□□ -1.24
CCDC88A-212ENST00000474059 RNGTTO60942 597 aaKnown RBP7.29□□□□□ -1.24
CCDC88A-212ENST00000474059 GADD45BO75293 160 aaPredicted RBP7.29□□□□□ -1.24
CCDC88A-212ENST00000474059 PDE3BQ13370 1112 aa7.29□□□□□ -1.24
CCDC88A-212ENST00000474059 TXNDC2Q86VQ3 553 aa7.29□□□□□ -1.24
CCDC88A-212ENST00000474059 SPACA3Q8IXA5 215 aa7.29□□□□□ -1.24
CCDC88A-212ENST00000474059 RBAK-RBAKDNI3L0D1 243 aa7.28□□□□□ -1.24
CCDC88A-212ENST00000474059 ITIH2P19823 946 aa7.28□□□□□ -1.24
CCDC88A-212ENST00000474059 SULF2Q8IWU5 870 aa7.28□□□□□ -1.24
CCDC88A-212ENST00000474059 ALKBH8Q96BT7 664 aaKnown RBP7.28□□□□□ -1.24
CCDC88A-212ENST00000474059 CITED4Q96RK1 184 aa7.28□□□□□ -1.24
CCDC88A-212ENST00000474059 TMEM39AQ9NV64 488 aa7.28□□□□□ -1.24
CCDC88A-212ENST00000474059 TRAK1Q9UPV9 953 aa7.28□□□□□ -1.24
CCDC88A-212ENST00000474059 USTQ9Y2C2 406 aa7.28□□□□□ -1.24
CCDC88A-212ENST00000474059 TMEM265A0A087WTH1 108 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 FCGRTP55899 365 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 ERVK-24P63145 666 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 NKPD1Q17RQ9 610 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 SLC23A3Q6PIS1 610 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 RNF214Q8ND24 703 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 GPBAR1Q8TDU6 330 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 KCNB2Q92953 911 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 KRTAP4-11Q9BYQ6 195 aa7.27□□□□□ -1.25
CCDC88A-212ENST00000474059 C1QL4Q86Z23 238 aa7.26□□□□□ -1.25
CCDC88A-212ENST00000474059 GPN3Q9UHW5 284 aaPredicted RBP7.26□□□□□ -1.25
CCDC88A-212ENST00000474059 ARNTP27540 789 aa7.25□□□□□ -1.25
CCDC88A-212ENST00000474059 RING1Q06587 406 aa7.25□□□□□ -1.25
CCDC88A-212ENST00000474059 ANGEL2Q5VTE6 544 aaKnown RBP7.25□□□□□ -1.25
CCDC88A-212ENST00000474059 FYB2Q5VWT5 728 aa7.25□□□□□ -1.25
CCDC88A-212ENST00000474059 DTHD1Q6ZMT9 781 aa7.25□□□□□ -1.25
CCDC88A-212ENST00000474059 C3orf58Q8NDZ4 430 aa7.25□□□□□ -1.25
CCDC88A-212ENST00000474059 RBCK1Q9BYM8 510 aa7.25□□□□□ -1.25
CCDC88A-212ENST00000474059 SNX11Q9Y5W9 270 aa7.25□□□□□ -1.25
CCDC88A-212ENST00000474059 EOMESO95936 686 aa7.24□□□□□ -1.25
CCDC88A-212ENST00000474059 RASIP1Q5U651 963 aa7.24□□□□□ -1.25
CCDC88A-212ENST00000474059 MAP1SQ66K74 1059 aaPredicted RBP7.24□□□□□ -1.25
CCDC88A-212ENST00000474059 ZSWIM9Q86XI8 627 aa7.24□□□□□ -1.25
CCDC88A-212ENST00000474059 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.24□□□□□ -1.25
CCDC88A-212ENST00000474059 BCO2Q9BYV7 579 aa7.24□□□□□ -1.25
CCDC88A-212ENST00000474059 CTNND2Q9UQB3 1225 aa7.24□□□□□ -1.25
CCDC88A-212ENST00000474059 IGF2BP3O00425 579 aaKnown RBP eCLIP7.23□□□□□ -1.25
CCDC88A-212ENST00000474059 PPM1JQ5JR12 505 aa7.23□□□□□ -1.25
CCDC88A-212ENST00000474059 GRIN3AQ8TCU5 1115 aa7.23□□□□□ -1.25
CCDC88A-212ENST00000474059 C19orf73Q9NVV2 129 aa7.23□□□□□ -1.25
CCDC88A-212ENST00000474059 PITPNM2Q9BZ72 1349 aa7.23□□□□□ -1.25
CCDC88A-212ENST00000474059 CNTNAP4Q9C0A0 1308 aa7.23□□□□□ -1.25
CCDC88A-212ENST00000474059 PAGE1O75459 146 aa7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 KRT1P04264 644 aa7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 NME2P22392 152 aa7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 PPP2R3AQ06190 1150 aa7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 TMC7Q7Z402 723 aa7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 KSR1Q8IVT5 923 aa7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 LIN37Q96GY3 246 aaPredicted RBP7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 DMRTB1Q96MA1 342 aa7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 NECAB3Q96P71 396 aaPredicted RBP7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 PRDM10Q9NQV6 1147 aa7.22□□□□□ -1.25
CCDC88A-212ENST00000474059 BMP6P22004 513 aa7.21□□□□□ -1.26
CCDC88A-212ENST00000474059 NXPE4Q6UWF7 544 aa7.21□□□□□ -1.26
CCDC88A-212ENST00000474059 FAM84AQ96KN4 292 aa7.21□□□□□ -1.26
CCDC88A-212ENST00000474059 CSADQ9Y600 493 aa7.21□□□□□ -1.26
CCDC88A-212ENST00000474059 LRRC10BA6NIK2 292 aa7.2□□□□□ -1.26
CCDC88A-212ENST00000474059 ENC1O14682 589 aa7.2□□□□□ -1.26
CCDC88A-212ENST00000474059 ZP2Q05996 745 aa7.2□□□□□ -1.26
CCDC88A-212ENST00000474059 DSC3Q14574 896 aa7.2□□□□□ -1.26
CCDC88A-212ENST00000474059 MLANAQ16655 118 aa7.2□□□□□ -1.26
CCDC88A-212ENST00000474059 B4GALNT3Q6L9W6 998 aa7.2□□□□□ -1.26
CCDC88A-212ENST00000474059 LCNL1Q6ZST4 164 aa7.2□□□□□ -1.26
CCDC88A-212ENST00000474059 BHLHE22Q8NFJ8 381 aaPredicted RBP7.2□□□□□ -1.26
CCDC88A-212ENST00000474059 ZNF865P0CJ78 1059 aaPredicted RBP7.19□□□□□ -1.26
CCDC88A-212ENST00000474059 XRCC5P13010 732 aaKnown RBP7.19□□□□□ -1.26
CCDC88A-212ENST00000474059 CFPP27918 469 aa7.19□□□□□ -1.26
CCDC88A-212ENST00000474059 IKZF1Q13422 519 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms