RNA–Protein interactions for RNA: ENST00000473782.1

HPS4-210, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-210ENST00000473782 GUCD1Q96NT3 240 aa20.49■□□□□ 0.87
HPS4-210ENST00000473782 DAGLAQ9Y4D2 1042 aa20.49■□□□□ 0.87
HPS4-210ENST00000473782 POTEB2H3BUK9 544 aa20.48■□□□□ 0.87
HPS4-210ENST00000473782 CCDC27Q2M243 656 aa20.48■□□□□ 0.87
HPS4-210ENST00000473782 MAST3O60307 1309 aa20.48■□□□□ 0.87
HPS4-210ENST00000473782 FRAT2O75474 233 aaPredicted RBP20.47■□□□□ 0.87
HPS4-210ENST00000473782 DIXDC1Q155Q3 683 aa20.47■□□□□ 0.87
HPS4-210ENST00000473782 CAVIN4Q5BKX8 364 aa20.47■□□□□ 0.87
HPS4-210ENST00000473782 SCYL3Q8IZE3 742 aa20.47■□□□□ 0.87
HPS4-210ENST00000473782 NBPF3Q9H094 633 aa20.47■□□□□ 0.87
HPS4-210ENST00000473782 GJD2Q9UKL4 321 aa20.47■□□□□ 0.87
HPS4-210ENST00000473782 PFASO15067 1338 aa20.47■□□□□ 0.87
HPS4-210ENST00000473782 MUC3AQ02505 3323 aa20.47■□□□□ 0.87
HPS4-210ENST00000473782 PDE8BO95263 885 aa20.46■□□□□ 0.87
HPS4-210ENST00000473782 FGFR2P21802 821 aa20.46■□□□□ 0.87
HPS4-210ENST00000473782 MAP3K10Q02779 954 aa20.46■□□□□ 0.87
HPS4-210ENST00000473782 GADL1Q6ZQY3 521 aa20.46■□□□□ 0.87
HPS4-210ENST00000473782 SH3BP5LQ7L8J4 393 aa20.46■□□□□ 0.87
HPS4-210ENST00000473782 ANKRD13CQ8N6S4 541 aa20.46■□□□□ 0.87
HPS4-210ENST00000473782 UBE2OQ9C0C9 1292 aaKnown RBP20.46■□□□□ 0.87
HPS4-210ENST00000473782 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.46■□□□□ 0.87
HPS4-210ENST00000473782 OGDHLQ9ULD0 1010 aa20.46■□□□□ 0.87
HPS4-210ENST00000473782 C11orf49Q9H6J7 331 aa20.45■□□□□ 0.86
HPS4-210ENST00000473782 PRKRIP1Q9H875 184 aaPredicted RBP20.45■□□□□ 0.86
HPS4-210ENST00000473782 TAOK2Q9UL54 1235 aa20.45■□□□□ 0.86
HPS4-210ENST00000473782 RPTORQ8N122 1335 aa20.45■□□□□ 0.86
HPS4-210ENST00000473782 FANCIQ9NVI1 1328 aa20.45■□□□□ 0.86
HPS4-210ENST00000473782 COL2A1P02458 1487 aaPredicted RBP20.44■□□□□ 0.86
HPS4-210ENST00000473782 CDH23Q9H251 3354 aa20.44■□□□□ 0.86
HPS4-210ENST00000473782 HMGCRP04035 888 aa20.44■□□□□ 0.86
HPS4-210ENST00000473782 NBPF7P0C2Y1 421 aaPredicted RBP20.44■□□□□ 0.86
HPS4-210ENST00000473782 RABL6Q3YEC7 729 aaPredicted RBP20.44■□□□□ 0.86
HPS4-210ENST00000473782 METTL24Q5JXM2 366 aa20.44■□□□□ 0.86
HPS4-210ENST00000473782 COA7Q96BR5 231 aa20.44■□□□□ 0.86
HPS4-210ENST00000473782 C9orf78Q9NZ63 289 aaPredicted RBP20.44■□□□□ 0.86
HPS4-210ENST00000473782 PTPRFP10586 1907 aa20.44■□□□□ 0.86
HPS4-210ENST00000473782 CACNA1FO60840 1977 aa20.44■□□□□ 0.86
HPS4-210ENST00000473782 IL16Q14005 1332 aa20.44■□□□□ 0.86
HPS4-210ENST00000473782 DDX60LQ5H9U9 1706 aaKnown RBP20.44■□□□□ 0.86
HPS4-210ENST00000473782 FAM110CQ1W6H9 321 aa20.43■□□□□ 0.86
HPS4-210ENST00000473782 TREML2Q5T2D2 321 aa20.43■□□□□ 0.86
HPS4-210ENST00000473782 FAM109BQ6ICB4 259 aaPredicted RBP20.43■□□□□ 0.86
HPS4-210ENST00000473782 CCDC84Q86UT8 332 aaPredicted RBP20.43■□□□□ 0.86
HPS4-210ENST00000473782 ANKRD44Q8N8A2 993 aa20.43■□□□□ 0.86
HPS4-210ENST00000473782 PHIPQ8WWQ0 1821 aa20.43■□□□□ 0.86
HPS4-210ENST00000473782 DNAH12Q6ZR08 3092 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 ALDH1L1O75891 902 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 COL6A1P12109 1028 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 PRDX5P30044 214 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 KLHDC4Q8TBB5 520 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 SMCR8Q8TEV9 937 aaPredicted RBP20.42■□□□□ 0.86
HPS4-210ENST00000473782 BICC1Q9H694 974 aaKnown RBP20.42■□□□□ 0.86
HPS4-210ENST00000473782 USP40Q9NVE5 1235 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 AGTPBP1Q9UPW5 1226 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 UTYO14607 1347 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 KIF16BQ96L93 1317 aa20.42■□□□□ 0.86
HPS4-210ENST00000473782 MAP3K21Q5TCX8 1036 aa20.41■□□□□ 0.86
HPS4-210ENST00000473782 HMX1Q9NP08 348 aaPredicted RBP20.41■□□□□ 0.86
HPS4-210ENST00000473782 RFX7Q2KHR2 1363 aa20.41■□□□□ 0.86
HPS4-210ENST00000473782 TTC28Q96AY4 2481 aa20.41■□□□□ 0.86
HPS4-210ENST00000473782 TRIM75PA6NK02 468 aa20.4■□□□□ 0.86
HPS4-210ENST00000473782 WDR66Q8TBY9 1149 aa20.4■□□□□ 0.86
HPS4-210ENST00000473782 TRIB2Q92519 343 aa20.4■□□□□ 0.86
HPS4-210ENST00000473782 IDI2Q9BXS1 227 aa20.4■□□□□ 0.86
HPS4-210ENST00000473782 PRDM6Q9NQX0 595 aa20.4■□□□□ 0.86
HPS4-210ENST00000473782 PICK1Q9NRD5 415 aa20.4■□□□□ 0.86
HPS4-210ENST00000473782 AK9Q5TCS8 1911 aa20.39■□□□□ 0.86
HPS4-210ENST00000473782 PLXNB2O15031 1838 aa20.39■□□□□ 0.86
HPS4-210ENST00000473782 DDTLA6NHG4 134 aaPredicted RBP20.39■□□□□ 0.85
HPS4-210ENST00000473782 RGS3P49796 1198 aa20.39■□□□□ 0.85
HPS4-210ENST00000473782 EXOSC9Q06265 439 aaKnown RBP20.39■□□□□ 0.85
HPS4-210ENST00000473782 MDM2Q00987 491 aaPredicted RBP20.38■□□□□ 0.85
HPS4-210ENST00000473782 LRRC26Q2I0M4 334 aa20.38■□□□□ 0.85
HPS4-210ENST00000473782 FAM161BQ96MY7 647 aa20.38■□□□□ 0.85
HPS4-210ENST00000473782 SRCIN1Q9C0H9 1055 aa20.38■□□□□ 0.85
HPS4-210ENST00000473782 CTNND1O60716 968 aaKnown RBP20.37■□□□□ 0.85
HPS4-210ENST00000473782 ENTPD3O75355 529 aa20.37■□□□□ 0.85
HPS4-210ENST00000473782 PUM3Q15397 648 aaKnown RBP20.37■□□□□ 0.85
HPS4-210ENST00000473782 DDX4Q9NQI0 724 aaKnown RBP20.37■□□□□ 0.85
HPS4-210ENST00000473782 CCDC184Q52MB2 194 aa20.36■□□□□ 0.85
HPS4-210ENST00000473782 LHX8Q68G74 356 aa20.36■□□□□ 0.85
HPS4-210ENST00000473782 SPINK5Q9NQ38 1064 aaPredicted RBP20.36■□□□□ 0.85
HPS4-210ENST00000473782 DOCK2Q92608 1830 aa20.35■□□□□ 0.85
HPS4-210ENST00000473782 IFIT1P09914 478 aaKnown RBP20.35■□□□□ 0.85
HPS4-210ENST00000473782 SLC4A10Q6U841 1118 aa20.35■□□□□ 0.85
HPS4-210ENST00000473782 RFX5P48382 616 aaPredicted RBP20.34■□□□□ 0.85
HPS4-210ENST00000473782 PROCA1Q8NCQ7 364 aaPredicted RBP20.34■□□□□ 0.85
HPS4-210ENST00000473782 LRRFIP2Q9Y608 721 aaKnown RBP20.34■□□□□ 0.85
HPS4-210ENST00000473782 DOCK1Q14185 1865 aa20.34■□□□□ 0.85
HPS4-210ENST00000473782 GAKO14976 1311 aa20.33■□□□□ 0.85
HPS4-210ENST00000473782 SALL1Q9NSC2 1324 aa20.33■□□□□ 0.85
HPS4-210ENST00000473782 PEX10O60683 326 aa20.33■□□□□ 0.85
HPS4-210ENST00000473782 LDHBP07195 334 aaKnown RBP20.33■□□□□ 0.85
HPS4-210ENST00000473782 PRKAR2AP13861 404 aaKnown RBP20.33■□□□□ 0.85
HPS4-210ENST00000473782 GCLCP48506 637 aaPredicted RBP20.33■□□□□ 0.85
HPS4-210ENST00000473782 NCBP3Q53F19 620 aaKnown RBP20.33■□□□□ 0.85
HPS4-210ENST00000473782 ASCC2Q9H1I8 757 aaPredicted RBP20.33■□□□□ 0.85
HPS4-210ENST00000473782 PNMA3Q9UL41 463 aa20.33■□□□□ 0.85
HPS4-210ENST00000473782 CYP2B6P20813 491 aa20.32■□□□□ 0.84
HPS4-210ENST00000473782 RRP1BQ14684 758 aaKnown RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms