RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 SLC5A6Q9Y289 635 aa6□□□□□ -1.45
SCN1A-205ENST00000473295 FMR1Q06787 632 aaKnown RBP eCLIP5.99□□□□□ -1.45
SCN1A-205ENST00000473295 SCARA3Q6AZY7 606 aa5.99□□□□□ -1.45
SCN1A-205ENST00000473295 RNF214Q8ND24 703 aa5.99□□□□□ -1.45
SCN1A-205ENST00000473295 ACSBG1Q96GR2 724 aa5.99□□□□□ -1.45
SCN1A-205ENST00000473295 NECAB3Q96P71 396 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-205ENST00000473295 MKNK2Q9HBH9 465 aa5.99□□□□□ -1.45
SCN1A-205ENST00000473295 CBX8Q9HC52 389 aa5.99□□□□□ -1.45
SCN1A-205ENST00000473295 SSU72Q9NP77 194 aaKnown RBP5.99□□□□□ -1.45
SCN1A-205ENST00000473295 SPG7Q9UQ90 795 aa5.99□□□□□ -1.45
SCN1A-205ENST00000473295 FAM87AP0C7U9 286 aa5.98□□□□□ -1.45
SCN1A-205ENST00000473295 HCLS1P14317 486 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-205ENST00000473295 ZNF252P-AS1Q0IIN9 211 aa5.98□□□□□ -1.45
SCN1A-205ENST00000473295 LRRC14Q15048 493 aa5.98□□□□□ -1.45
SCN1A-205ENST00000473295 ZC3H12AQ5D1E8 599 aaKnown RBP5.98□□□□□ -1.45
SCN1A-205ENST00000473295 MAP1SQ66K74 1059 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-205ENST00000473295 CBLL1Q75N03 491 aa5.98□□□□□ -1.45
SCN1A-205ENST00000473295 C3orf58Q8NDZ4 430 aa5.98□□□□□ -1.45
SCN1A-205ENST00000473295 NETO1Q8TDF5 533 aa5.98□□□□□ -1.45
SCN1A-205ENST00000473295 LGR6Q9HBX8 967 aa5.98□□□□□ -1.45
SCN1A-205ENST00000473295 IVNS1ABPQ9Y6Y0 642 aa5.98□□□□□ -1.45
SCN1A-205ENST00000473295 TRIM37O94972 964 aa5.97□□□□□ -1.45
SCN1A-205ENST00000473295 JUNBP17275 347 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-205ENST00000473295 CDK5R2Q13319 367 aa5.97□□□□□ -1.45
SCN1A-205ENST00000473295 ARHGAP27Q6ZUM4 889 aa5.97□□□□□ -1.45
SCN1A-205ENST00000473295 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.97□□□□□ -1.45
SCN1A-205ENST00000473295 GPBAR1Q8TDU6 330 aa5.97□□□□□ -1.45
SCN1A-205ENST00000473295 ASIC4Q96FT7 647 aa5.97□□□□□ -1.45
SCN1A-205ENST00000473295 FRMD6Q96NE9 622 aa5.97□□□□□ -1.45
SCN1A-205ENST00000473295 PAK6Q9NQU5 681 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-205ENST00000473295 YBX3P16989 372 aaKnown RBP eCLIP5.96□□□□□ -1.46
SCN1A-205ENST00000473295 FGD1P98174 961 aa5.96□□□□□ -1.46
SCN1A-205ENST00000473295 TPTE2Q6XPS3 522 aa5.96□□□□□ -1.46
SCN1A-205ENST00000473295 NFXL1Q6ZNB6 911 aa5.96□□□□□ -1.46
SCN1A-205ENST00000473295 KCT2Q8NC54 265 aa5.96□□□□□ -1.46
SCN1A-205ENST00000473295 BCL7CQ8WUZ0 217 aaPredicted RBP5.96□□□□□ -1.46
SCN1A-205ENST00000473295 CACNA2D2Q9NY47 1150 aa5.96□□□□□ -1.46
SCN1A-205ENST00000473295 FAM8A1Q9UBU6 413 aa5.96□□□□□ -1.46
SCN1A-205ENST00000473295 CYP8B1Q9UNU6 501 aa5.96□□□□□ -1.46
SCN1A-205ENST00000473295 IFI16Q16666 785 aaKnown RBP5.95□□□□□ -1.46
SCN1A-205ENST00000473295 LLGL2Q6P1M3 1020 aa5.95□□□□□ -1.46
SCN1A-205ENST00000473295 STK35Q8TDR2 534 aa5.95□□□□□ -1.46
SCN1A-205ENST00000473295 ISL2Q96A47 359 aa5.95□□□□□ -1.46
SCN1A-205ENST00000473295 DUSP23Q9BVJ7 150 aa5.95□□□□□ -1.46
SCN1A-205ENST00000473295 C12orf49Q9H741 205 aa5.95□□□□□ -1.46
SCN1A-205ENST00000473295 PICK1Q9NRD5 415 aa5.95□□□□□ -1.46
SCN1A-205ENST00000473295 VAV3Q9UKW4 847 aa5.95□□□□□ -1.46
SCN1A-205ENST00000473295 BIN1O00499 593 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 ENC1O14682 589 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 FANCGO15287 622 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 NEFMP07197 916 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 BMP6P22004 513 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 PRKCQQ04759 706 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 LCE3BQ5TA77 95 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 KRTAP1-3Q8IUG1 177 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 OSBPL7Q9BZF2 842 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 GTF2IRD1Q9UHL9 959 aa5.94□□□□□ -1.46
SCN1A-205ENST00000473295 TMEM265A0A087WTH1 108 aa5.93□□□□□ -1.46
SCN1A-205ENST00000473295 CEACAM5P06731 702 aa5.93□□□□□ -1.46
SCN1A-205ENST00000473295 PLCL1Q15111 1095 aa5.93□□□□□ -1.46
SCN1A-205ENST00000473295 PLD6Q8N2A8 252 aaKnown RBP5.93□□□□□ -1.46
SCN1A-205ENST00000473295 TOP6BLQ8N6T0 577 aa5.93□□□□□ -1.46
SCN1A-205ENST00000473295 HRASLS5Q96KN8 279 aa5.93□□□□□ -1.46
SCN1A-205ENST00000473295 TRAIPQ9BWF2 469 aa5.93□□□□□ -1.46
SCN1A-205ENST00000473295 ITGB5P18084 799 aa5.92□□□□□ -1.46
SCN1A-205ENST00000473295 SV2BQ7L1I2 683 aa5.92□□□□□ -1.46
SCN1A-205ENST00000473295 CDC37L1Q7L3B6 337 aa5.92□□□□□ -1.46
SCN1A-205ENST00000473295 ELMO3Q96BJ8 720 aa5.92□□□□□ -1.46
SCN1A-205ENST00000473295 SNX11Q9Y5W9 270 aa5.92□□□□□ -1.46
SCN1A-205ENST00000473295 IGF2BP3O00425 579 aaKnown RBP eCLIP5.91□□□□□ -1.46
SCN1A-205ENST00000473295 LEFTY1O75610 366 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 LDHBP07195 334 aaKnown RBP5.91□□□□□ -1.46
SCN1A-205ENST00000473295 USP17L7P0C7H9 530 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 FUT4P22083 530 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 OXCT1P55809 520 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 RING1Q06587 406 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 COL19A1Q14993 1142 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 PPM1JQ5JR12 505 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 PCNX4Q63HM2 1172 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 KRTAP19-1Q8IUB9 90 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 FAM181AQ8N9Y4 354 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 PRDM10Q9NQV6 1147 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 PCDHA4Q9UN74 947 aa5.91□□□□□ -1.46
SCN1A-205ENST00000473295 BTBD11A6QL63 1104 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 DCDC2CA8MYV0 355 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 FBXO24O75426 580 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 PAGE1O75459 146 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 AOC3Q16853 763 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 ZNF792Q3KQV3 632 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 ANGEL2Q5VTE6 544 aaKnown RBP5.9□□□□□ -1.46
SCN1A-205ENST00000473295 ZNF574Q6ZN55 896 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-205ENST00000473295 SPRED2Q7Z698 418 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 ZNF507Q8TCN5 953 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 GRIN3AQ8TCU5 1115 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 WWC3Q9ULE0 1092 aa5.9□□□□□ -1.46
SCN1A-205ENST00000473295 TTF2Q9UNY4 1162 aaKnown RBP5.9□□□□□ -1.46
SCN1A-205ENST00000473295 P4HBP07237 508 aaKnown RBP5.89□□□□□ -1.47
SCN1A-205ENST00000473295 CD8BP10966 210 aa5.89□□□□□ -1.47
SCN1A-205ENST00000473295 EIF4BP23588 611 aaKnown RBP5.89□□□□□ -1.47
SCN1A-205ENST00000473295 GNA15P30679 374 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms