RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 TNPO2O14787 897 aaKnown RBP23.12■■□□□ 1.29
SHH-205ENST00000472308 IFIT1P09914 478 aaKnown RBP23.12■■□□□ 1.29
SHH-205ENST00000472308 PTPRAP18433 802 aa23.12■■□□□ 1.29
SHH-205ENST00000472308 PRDX5P30044 214 aa23.12■■□□□ 1.29
SHH-205ENST00000472308 FASTKD5Q7L8L6 764 aaKnown RBP23.12■■□□□ 1.29
SHH-205ENST00000472308 SCYL3Q8IZE3 742 aa23.12■■□□□ 1.29
SHH-205ENST00000472308 SLC45A1Q9Y2W3 748 aa23.12■■□□□ 1.29
SHH-205ENST00000472308 SALL2Q9Y467 1007 aaPredicted RBP23.12■■□□□ 1.29
SHH-205ENST00000472308 AFG3L2Q9Y4W6 797 aa23.12■■□□□ 1.29
SHH-205ENST00000472308 MYH13Q9UKX3 1938 aa23.12■■□□□ 1.29
SHH-205ENST00000472308 DOCK2Q92608 1830 aa23.11■■□□□ 1.29
SHH-205ENST00000472308 CAPN2P17655 700 aa23.11■■□□□ 1.29
SHH-205ENST00000472308 PTPRFP10586 1907 aa23.11■■□□□ 1.29
SHH-205ENST00000472308 RFX7Q2KHR2 1363 aa23.11■■□□□ 1.29
SHH-205ENST00000472308 AK9Q5TCS8 1911 aa23.1■■□□□ 1.29
SHH-205ENST00000472308 SLURP2P0DP57 97 aa23.1■■□□□ 1.29
SHH-205ENST00000472308 BMP8BP34820 402 aa23.1■■□□□ 1.29
SHH-205ENST00000472308 GADL1Q6ZQY3 521 aa23.1■■□□□ 1.29
SHH-205ENST00000472308 USP40Q9NVE5 1235 aa23.1■■□□□ 1.29
SHH-205ENST00000472308 GPR153Q6NV75 609 aa23.09■■□□□ 1.29
SHH-205ENST00000472308 Q7L0L9 218 aa23.09■■□□□ 1.29
SHH-205ENST00000472308 SH3BP5LQ7L8J4 393 aa23.09■■□□□ 1.29
SHH-205ENST00000472308 PICK1Q9NRD5 415 aa23.09■■□□□ 1.29
SHH-205ENST00000472308 PHIPQ8WWQ0 1821 aa23.08■■□□□ 1.29
SHH-205ENST00000472308 NECAB2Q7Z6G3 386 aa23.08■■□□□ 1.29
SHH-205ENST00000472308 C7orf61Q8IZ16 206 aa23.08■■□□□ 1.29
SHH-205ENST00000472308 SMCR8Q8TEV9 937 aaPredicted RBP23.08■■□□□ 1.29
SHH-205ENST00000472308 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.08■■□□□ 1.29
SHH-205ENST00000472308 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.08■■□□□ 1.29
SHH-205ENST00000472308 ZMYND8Q9ULU4 1186 aaPredicted RBP23.08■■□□□ 1.29
SHH-205ENST00000472308 RGS3P49796 1198 aa23.07■■□□□ 1.28
SHH-205ENST00000472308 MAP3K10Q02779 954 aa23.07■■□□□ 1.28
SHH-205ENST00000472308 DEFB123Q8N688 67 aa23.07■■□□□ 1.28
SHH-205ENST00000472308 LPIN2Q92539 896 aa23.07■■□□□ 1.28
SHH-205ENST00000472308 TAOK2Q9UL54 1235 aa23.07■■□□□ 1.28
SHH-205ENST00000472308 LAMA2P24043 3122 aaKnown RBP23.06■■□□□ 1.28
SHH-205ENST00000472308 SLC5A1P13866 664 aa23.06■■□□□ 1.28
SHH-205ENST00000472308 ZEB1P37275 1124 aaPredicted RBP23.06■■□□□ 1.28
SHH-205ENST00000472308 RFX5P48382 616 aaPredicted RBP23.06■■□□□ 1.28
SHH-205ENST00000472308 ANKRD13CQ8N6S4 541 aa23.06■■□□□ 1.28
SHH-205ENST00000472308 IDI2Q9BXS1 227 aa23.06■■□□□ 1.28
SHH-205ENST00000472308 VCANP13611 3396 aa23.06■■□□□ 1.28
SHH-205ENST00000472308 DOCK1Q14185 1865 aa23.06■■□□□ 1.28
SHH-205ENST00000472308 DOCK3Q8IZD9 2030 aa23.06■■□□□ 1.28
SHH-205ENST00000472308 TRIM75PA6NK02 468 aa23.05■■□□□ 1.28
SHH-205ENST00000472308 LDHBP07195 334 aaKnown RBP23.05■■□□□ 1.28
SHH-205ENST00000472308 CCDC84Q86UT8 332 aaPredicted RBP23.05■■□□□ 1.28
SHH-205ENST00000472308 AGTPBP1Q9UPW5 1226 aa23.05■■□□□ 1.28
SHH-205ENST00000472308 STXBP5LQ9Y2K9 1186 aa23.05■■□□□ 1.28
SHH-205ENST00000472308 EYA2O00167 538 aa23.04■■□□□ 1.28
SHH-205ENST00000472308 ENTPD3O75355 529 aa23.04■■□□□ 1.28
SHH-205ENST00000472308 LRIT3Q3SXY7 679 aa23.04■■□□□ 1.28
SHH-205ENST00000472308 TREML2Q5T2D2 321 aa23.04■■□□□ 1.28
SHH-205ENST00000472308 ATG9AQ7Z3C6 839 aa23.04■■□□□ 1.28
SHH-205ENST00000472308 ANKLE1Q8NAG6 615 aa23.04■■□□□ 1.28
SHH-205ENST00000472308 COA7Q96BR5 231 aa23.04■■□□□ 1.28
SHH-205ENST00000472308 SALL1Q9NSC2 1324 aa23.04■■□□□ 1.28
SHH-205ENST00000472308 DDTLA6NHG4 134 aaPredicted RBP23.03■■□□□ 1.28
SHH-205ENST00000472308 FAM110CQ1W6H9 321 aa23.03■■□□□ 1.28
SHH-205ENST00000472308 MTMR10Q9NXD2 777 aa23.03■■□□□ 1.28
SHH-205ENST00000472308 GAKO14976 1311 aa23.03■■□□□ 1.28
SHH-205ENST00000472308 SYN1P17600 705 aa23.02■■□□□ 1.28
SHH-205ENST00000472308 MAGEA10P43363 369 aaPredicted RBP23.02■■□□□ 1.28
SHH-205ENST00000472308 TRIM32Q13049 653 aa23.02■■□□□ 1.28
SHH-205ENST00000472308 USP44Q9H0E7 712 aa23.02■■□□□ 1.28
SHH-205ENST00000472308 DDX4Q9NQI0 724 aaKnown RBP23.02■■□□□ 1.28
SHH-205ENST00000472308 LRRFIP2Q9Y608 721 aaKnown RBP23.02■■□□□ 1.28
SHH-205ENST00000472308 DDX60LQ5H9U9 1706 aaKnown RBP23.02■■□□□ 1.28
SHH-205ENST00000472308 CTNND1O60716 968 aaKnown RBP23.01■■□□□ 1.27
SHH-205ENST00000472308 HMGCRP04035 888 aa23.01■■□□□ 1.27
SHH-205ENST00000472308 EYSQ5T1H1 3165 aa23■■□□□ 1.27
SHH-205ENST00000472308 LOC285556D6RIA3 1793 aa23■■□□□ 1.27
SHH-205ENST00000472308 ZSCAN29Q8IWY8 852 aaPredicted RBP23■■□□□ 1.27
SHH-205ENST00000472308 TDHQ8IZJ6 230 aa23■■□□□ 1.27
SHH-205ENST00000472308 NBPF3Q9H094 633 aa23■■□□□ 1.27
SHH-205ENST00000472308 GJD2Q9UKL4 321 aa23■■□□□ 1.27
SHH-205ENST00000472308 SPTBN5Q9NRC6 3674 aaKnown RBP23■■□□□ 1.27
SHH-205ENST00000472308 PHKA1P46020 1223 aa22.99■■□□□ 1.27
SHH-205ENST00000472308 RPTORQ8N122 1335 aa22.99■■□□□ 1.27
SHH-205ENST00000472308 MYH2Q9UKX2 1941 aa22.98■■□□□ 1.27
SHH-205ENST00000472308 ATP2B3Q16720 1220 aa22.98■■□□□ 1.27
SHH-205ENST00000472308 MRPL50Q8N5N7 158 aaKnown RBP22.98■■□□□ 1.27
SHH-205ENST00000472308 C11orf49Q9H6J7 331 aa22.98■■□□□ 1.27
SHH-205ENST00000472308 PNMA3Q9UL41 463 aa22.98■■□□□ 1.27
SHH-205ENST00000472308 PLXNB2O15031 1838 aa22.97■■□□□ 1.27
SHH-205ENST00000472308 PROCA1Q8NCQ7 364 aaPredicted RBP22.97■■□□□ 1.27
SHH-205ENST00000472308 COL25A1Q9BXS0 654 aaPredicted RBP22.97■■□□□ 1.27
SHH-205ENST00000472308 HMX1Q9NP08 348 aaPredicted RBP22.97■■□□□ 1.27
SHH-205ENST00000472308 OGDHLQ9ULD0 1010 aa22.97■■□□□ 1.27
SHH-205ENST00000472308 DENND2AQ9ULE3 1009 aa22.97■■□□□ 1.27
SHH-205ENST00000472308 PFASO15067 1338 aa22.97■■□□□ 1.27
SHH-205ENST00000472308 FAM196BA6NMK8 535 aa22.96■■□□□ 1.27
SHH-205ENST00000472308 SEMA3EO15041 775 aa22.96■■□□□ 1.27
SHH-205ENST00000472308 PICALMQ13492 652 aa22.96■■□□□ 1.27
SHH-205ENST00000472308 TRIB2Q92519 343 aa22.96■■□□□ 1.27
SHH-205ENST00000472308 MRS2Q9HD23 443 aa22.96■■□□□ 1.27
SHH-205ENST00000472308 GNL3LQ9NVN8 582 aaKnown RBP22.96■■□□□ 1.27
SHH-205ENST00000472308 ZBTB22O15209 634 aa22.95■■□□□ 1.26
SHH-205ENST00000472308 GCLCP48506 637 aaPredicted RBP22.95■■□□□ 1.26
SHH-205ENST00000472308 DNAH12Q6ZR08 3092 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms