RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 FGRP09769 529 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 AOC3Q16853 763 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 STRIP1Q5VSL9 837 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 CTR9Q6PD62 1173 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 CLEC17AQ6ZS10 378 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 CHST3Q7LGC8 479 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 NECAB1Q8N987 351 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 FBXW7Q969H0 707 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 VPS33BQ9H267 617 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 DBNDD1Q9H9R9 158 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 PIM2Q9P1W9 311 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 MKRN1Q9UHC7 482 aaKnown RBP11.06□□□□□ -0.64
VPS52-216ENST00000471309 ANGEL1Q9UNK9 670 aaKnown RBP11.06□□□□□ -0.64
VPS52-216ENST00000471309 DAGLAQ9Y4D2 1042 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 CD2APQ9Y5K6 639 aa11.06□□□□□ -0.64
VPS52-216ENST00000471309 MINDY4BA8MYZ0 360 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 USP17L12C9JPN9 530 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 USP17L21D6R901 530 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 PPIP5K2O43314 1243 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 KDM4AO75164 1064 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 SLC3A2P08195 630 aaKnown RBP11.05□□□□□ -0.64
VPS52-216ENST00000471309 PDIA4P13667 645 aaKnown RBP11.05□□□□□ -0.64
VPS52-216ENST00000471309 GJB2P29033 226 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 APOBRQ0VD83 1088 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 DACT2Q5SW24 774 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 CYB5R4Q7L1T6 521 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 ESR2Q92731 530 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 GBP4Q96PP9 640 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 LLPHQ9BRT6 129 aaKnown RBP11.05□□□□□ -0.64
VPS52-216ENST00000471309 TTF2Q9UNY4 1162 aaKnown RBP11.05□□□□□ -0.64
VPS52-216ENST00000471309 TACC3Q9Y6A5 838 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 ARFGEF1Q9Y6D6 1849 aa11.05□□□□□ -0.64
VPS52-216ENST00000471309 COL4A5P29400 1685 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 NID2Q14112 1375 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 KLF18A0A0U1RQI7 1052 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 USP17L3A6NCW0 530 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 USP17L4A6NCW7 530 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 ORC4O43929 436 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 BRD1O95696 1058 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 PDIA3P30101 505 aaKnown RBP11.04□□□□□ -0.64
VPS52-216ENST00000471309 PTGER2P43116 358 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 USP5P45974 858 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 RHBDL3P58872 404 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 SCRN1Q12765 414 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 STK3Q13188 491 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 PKP1Q13835 747 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 NBR1Q14596 966 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 HHIPL2Q6UWX4 724 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 USP17L1Q7RTZ2 530 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 SGMS1Q86VZ5 419 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 AMOTL1Q8IY63 956 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 NKX2-3Q8TAU0 364 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 MRIQ9BWK5 157 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 MCM9Q9NXL9 1143 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS52-216ENST00000471309 ZDHHC9Q9Y397 364 aa11.04□□□□□ -0.64
VPS52-216ENST00000471309 WDR33Q9C0J8 1336 aaKnown RBP11.04□□□□□ -0.64
VPS52-216ENST00000471309 MYH1P12882 1939 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 CYP2D7A0A087X1C5 515 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 DDX11L8A8MPP1 907 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 GOLGA8BA8MQT2 603 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 PDCP20941 246 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 LIFRP42702 1097 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 HDLBPQ00341 1268 aaKnown RBP11.03□□□□□ -0.64
VPS52-216ENST00000471309 SART3Q15020 963 aaKnown RBP11.03□□□□□ -0.64
VPS52-216ENST00000471309 DALRD3Q5D0E6 543 aaKnown RBP11.03□□□□□ -0.64
VPS52-216ENST00000471309 TMEM67Q5HYA8 995 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 RRP12Q5JTH9 1297 aaKnown RBP11.03□□□□□ -0.64
VPS52-216ENST00000471309 C12orf60Q5U649 245 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 TEX11Q8IYF3 940 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 SMARCC2Q8TAQ2 1214 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 IGDCC4Q8TDY8 1250 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 TEKT1Q969V4 418 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 LY9Q9HBG7 655 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 GPHNQ9NQX3 736 aaPredicted RBP11.03□□□□□ -0.64
VPS52-216ENST00000471309 TOMM22Q9NS69 142 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 ZSWIM5Q9P217 1185 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 BRPF3Q9ULD4 1205 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 FLT1P17948 1338 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 MYO3BQ8WXR4 1341 aa11.03□□□□□ -0.64
VPS52-216ENST00000471309 PSDA5PKW4 1024 aaPredicted RBP11.02□□□□□ -0.65
VPS52-216ENST00000471309 IFIT3O14879 490 aaKnown RBP11.02□□□□□ -0.65
VPS52-216ENST00000471309 STX6O43752 255 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 DHX16O60231 1041 aaKnown RBP11.02□□□□□ -0.65
VPS52-216ENST00000471309 CYP2D6P10635 497 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 SYT1P21579 422 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 MCM4P33991 863 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 RCAN1P53805 252 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 APOA5Q6Q788 366 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 NSUN7Q8NE18 718 aaKnown RBP11.02□□□□□ -0.65
VPS52-216ENST00000471309 TGFBRAP1Q8WUH2 860 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 ZDHHC15Q96MV8 337 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 MXD3Q9BW11 206 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 INCENPQ9NQS7 918 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 KCNQ5Q9NR82 932 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 SERPINA10Q9UK55 444 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 HPS5Q9UPZ3 1129 aa11.02□□□□□ -0.65
VPS52-216ENST00000471309 ERICH2A1L162 156 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 PTPDC1A2A3K4 754 aa11.01□□□□□ -0.65
VPS52-216ENST00000471309 YDJCA8MPS7 323 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms