RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ZSWIM8A7E2V4 1837 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 TRIOO75962 3097 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 PRR23AA6NEV1 266 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 PROB1E7EW31 1015 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 DNAJB2P25686 324 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 PRSS12P56730 875 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 KIF4BQ2VIQ3 1234 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 NME9Q86XW9 330 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 SLF2Q8IX21 1173 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 GALNT6Q8NCL4 622 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 NECTIN2Q92692 538 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 HNRNPABQ99729 332 aaKnown RBP7.27□□□□□ -1.25
HMGB1-207ENST00000468384 ZFYVE28Q9HCC9 887 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 PAK6Q9NQU5 681 aaPredicted RBP7.27□□□□□ -1.25
HMGB1-207ENST00000468384 WASHC2AQ641Q2 1341 aa7.27□□□□□ -1.25
HMGB1-207ENST00000468384 ZZEF1O43149 2961 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 SMYD5Q6GMV2 418 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 ARMC9Q7Z3E5 817 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.26□□□□□ -1.25
HMGB1-207ENST00000468384 WHAMMQ8TF30 809 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 SLC10A4Q96EP9 437 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 WNK4Q96J92 1243 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 SETDB2Q96T68 719 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 SPG7Q9UQ90 795 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 LRRC37A2A6NM11 1700 aa7.26□□□□□ -1.25
HMGB1-207ENST00000468384 CAMTA2O94983 1202 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 OSBPP22059 807 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 PDE4AP27815 886 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 HOXD10P28358 340 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 SKIV2LQ15477 1246 aaKnown RBP7.25□□□□□ -1.25
HMGB1-207ENST00000468384 TAF1CQ15572 869 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-207ENST00000468384 GJD3Q8N144 294 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 ATOH1Q92858 354 aaPredicted RBP7.25□□□□□ -1.25
HMGB1-207ENST00000468384 TIFAQ96CG3 184 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 MRGPRX2Q96LB1 330 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 HECTD1Q9ULT8 2610 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 ADGRA2Q96PE1 1338 aa7.25□□□□□ -1.25
HMGB1-207ENST00000468384 COL1A1P02452 1464 aaPredicted RBP7.24□□□□□ -1.25
HMGB1-207ENST00000468384 VPS13AQ96RL7 3174 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 ITPR3Q14573 2671 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 YDJCA8MPS7 323 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 CTGFP29279 349 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 NF2P35240 595 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 AMPHP49418 695 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 SCARF1Q14162 830 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 DNAJC10Q8IXB1 793 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 SVOPQ8N4V2 548 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 DDX27Q96GQ7 796 aaKnown RBP7.24□□□□□ -1.25
HMGB1-207ENST00000468384 CHAMP1Q96JM3 812 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 SCAF8Q9UPN6 1271 aaKnown RBP7.24□□□□□ -1.25
HMGB1-207ENST00000468384 ZBTB1Q9Y2K1 713 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 CNOT1A5YKK6 2376 aaKnown RBP7.24□□□□□ -1.25
HMGB1-207ENST00000468384 PFASO15067 1338 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 MYPNQ86TC9 1320 aa7.24□□□□□ -1.25
HMGB1-207ENST00000468384 FRYQ5TBA9 3013 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 KTN1Q86UP2 1357 aaKnown RBP7.23□□□□□ -1.25
HMGB1-207ENST00000468384 ERVV-2B6SEH9 535 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 WNT7AO00755 349 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 DCXO43602 365 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 INHAP05111 366 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 PHKG2P15735 406 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 CAMK2BQ13554 666 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 PUM1Q14671 1186 aaKnown RBP eCLIP7.23□□□□□ -1.25
HMGB1-207ENST00000468384 KRTAP5-3Q6L8H2 238 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 IFNL2Q8IZJ0 200 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 HERVK_113Q902F9 699 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 IRF2BPLQ9H1B7 796 aa7.23□□□□□ -1.25
HMGB1-207ENST00000468384 FCF1Q9Y324 198 aaKnown RBP7.23□□□□□ -1.25
HMGB1-207ENST00000468384 SPEGQ15772 3267 aa7.22□□□□□ -1.25
HMGB1-207ENST00000468384 PSMD14O00487 310 aa7.22□□□□□ -1.25
HMGB1-207ENST00000468384 FURINP09958 794 aa7.22□□□□□ -1.25
HMGB1-207ENST00000468384 U2AF1L5P0DN76 240 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-207ENST00000468384 CYP19A1P11511 503 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-207ENST00000468384 PSMC4P43686 418 aa7.22□□□□□ -1.25
HMGB1-207ENST00000468384 U2AF1Q01081 240 aaKnown RBP eCLIP7.22□□□□□ -1.25
HMGB1-207ENST00000468384 LRRC26Q2I0M4 334 aa7.22□□□□□ -1.25
HMGB1-207ENST00000468384 ADSSL1Q8N142 457 aa7.22□□□□□ -1.25
HMGB1-207ENST00000468384 MICALL1Q8N3F8 863 aa7.22□□□□□ -1.25
HMGB1-207ENST00000468384 CHD7Q9P2D1 2997 aa7.22□□□□□ -1.25
HMGB1-207ENST00000468384 PLXNA3P51805 1871 aa7.21□□□□□ -1.25
HMGB1-207ENST00000468384 TLR2O60603 784 aa7.21□□□□□ -1.26
HMGB1-207ENST00000468384 ARHGEF15O94989 841 aa7.21□□□□□ -1.26
HMGB1-207ENST00000468384 FMNL1O95466 1100 aaPredicted RBP7.21□□□□□ -1.26
HMGB1-207ENST00000468384 RPS12P25398 132 aaKnown RBP7.21□□□□□ -1.26
HMGB1-207ENST00000468384 MARSP56192 900 aaKnown RBP7.21□□□□□ -1.26
HMGB1-207ENST00000468384 CLMNQ96JQ2 1002 aa7.21□□□□□ -1.26
HMGB1-207ENST00000468384 ZFP42Q96MM3 310 aa7.21□□□□□ -1.26
HMGB1-207ENST00000468384 PRR14Q9BWN1 585 aa7.21□□□□□ -1.26
HMGB1-207ENST00000468384 ANGEL1Q9UNK9 670 aaKnown RBP7.21□□□□□ -1.26
HMGB1-207ENST00000468384 COG5Q9UP83 839 aa7.21□□□□□ -1.26
HMGB1-207ENST00000468384 MYO9AB2RTY4 2548 aa7.21□□□□□ -1.26
HMGB1-207ENST00000468384 CEP295Q9C0D2 2601 aa7.2□□□□□ -1.26
HMGB1-207ENST00000468384 TAF1P21675 1872 aa7.2□□□□□ -1.26
HMGB1-207ENST00000468384 A0A087WZG4 1122 aa7.2□□□□□ -1.26
HMGB1-207ENST00000468384 TCERG1O14776 1098 aaKnown RBP7.2□□□□□ -1.26
HMGB1-207ENST00000468384 SSTR3P32745 418 aaPredicted RBP7.2□□□□□ -1.26
HMGB1-207ENST00000468384 GJA5P36382 358 aa7.2□□□□□ -1.26
HMGB1-207ENST00000468384 MLLT3P42568 568 aaPredicted RBP7.2□□□□□ -1.26
HMGB1-207ENST00000468384 PRKCZQ05513 592 aa7.2□□□□□ -1.26
HMGB1-207ENST00000468384 KIAA2012Q0VF49 1180 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 599.7 ms