RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 F13BP05160 661 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 ADMP35318 185 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 ST13P50502 369 aaKnown RBP6.91□□□□□ -1.3
VPS13D-203ENST00000466732 ERVK-24P63145 666 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 TRIM26Q12899 539 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-203ENST00000466732 SEZ6L2Q6UXD5 910 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 ZAR1Q86SH2 424 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 TBC1D32Q96NH3 1257 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 LGR6Q9HBX8 967 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 VTI1BQ9UEU0 232 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 PCDHA4Q9UN74 947 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 USP31Q70CQ4 1352 aa6.91□□□□□ -1.3
VPS13D-203ENST00000466732 DYNC1LI2O43237 492 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-203ENST00000466732 HCLS1P14317 486 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-203ENST00000466732 RPS26P62854 115 aaKnown RBP6.9□□□□□ -1.3
VPS13D-203ENST00000466732 PTPN11Q06124 597 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-203ENST00000466732 LRP8Q14114 963 aa6.9□□□□□ -1.3
VPS13D-203ENST00000466732 MAP3K11Q16584 847 aa6.9□□□□□ -1.3
VPS13D-203ENST00000466732 ZNF326Q5BKZ1 582 aaKnown RBP6.9□□□□□ -1.3
VPS13D-203ENST00000466732 ARTNQ5T4W7 220 aa6.9□□□□□ -1.3
VPS13D-203ENST00000466732 SMYD4Q8IYR2 804 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-203ENST00000466732 GIMAP7Q8NHV1 300 aa6.9□□□□□ -1.3
VPS13D-203ENST00000466732 GATA6Q92908 595 aa6.9□□□□□ -1.3
VPS13D-203ENST00000466732 CRELD1Q96HD1 420 aa6.9□□□□□ -1.3
VPS13D-203ENST00000466732 C1GALT1Q9NS00 363 aa6.9□□□□□ -1.3
VPS13D-203ENST00000466732 CSADQ9Y600 493 aa6.9□□□□□ -1.3
VPS13D-203ENST00000466732 DCDC2CA8MYV0 355 aa6.89□□□□□ -1.31
VPS13D-203ENST00000466732 RNGTTO60942 597 aaKnown RBP6.89□□□□□ -1.31
VPS13D-203ENST00000466732 NEFMP07197 916 aa6.89□□□□□ -1.31
VPS13D-203ENST00000466732 LIG3P49916 1009 aa6.89□□□□□ -1.31
VPS13D-203ENST00000466732 RNF214Q8ND24 703 aa6.89□□□□□ -1.31
VPS13D-203ENST00000466732 GAL3ST3Q96A11 431 aa6.89□□□□□ -1.31
VPS13D-203ENST00000466732 NOC4LQ9BVI4 516 aaKnown RBP6.89□□□□□ -1.31
VPS13D-203ENST00000466732 ATG3Q9NT62 314 aa6.89□□□□□ -1.31
VPS13D-203ENST00000466732 HYAL3O43820 417 aaPredicted RBP6.88□□□□□ -1.31
VPS13D-203ENST00000466732 COBLO75128 1261 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 SSTR4P31391 388 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 ITGAEP38570 1179 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 RING1Q06587 406 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 PPM1JQ5JR12 505 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 AGMOQ6ZNB7 445 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 C12orf40Q86WS4 652 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 ISL2Q96A47 359 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 OSBPL1AQ9BXW6 950 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 ZFP64Q9NPA5 681 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 PCOLCE2Q9UKZ9 415 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 PCDHB5Q9Y5E4 795 aa6.88□□□□□ -1.31
VPS13D-203ENST00000466732 FAM170BA6NMN3 283 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 MED26O95402 600 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 RLBP1P12271 317 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 LMNB1P20700 586 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 CD97P48960 835 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 SEPT6Q14141 434 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 INPP5AQ14642 412 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 LRFN4Q6PJG9 635 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 ELMO3Q96BJ8 720 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 METTL22Q9BUU2 404 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-203ENST00000466732 SSU72Q9NP77 194 aaKnown RBP6.87□□□□□ -1.31
VPS13D-203ENST00000466732 PIM2Q9P1W9 311 aa6.87□□□□□ -1.31
VPS13D-203ENST00000466732 ZNF16P17020 682 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-203ENST00000466732 TFE3P19532 575 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-203ENST00000466732 NTF4P34130 210 aa6.86□□□□□ -1.31
VPS13D-203ENST00000466732 GRIK1P39086 918 aa6.86□□□□□ -1.31
VPS13D-203ENST00000466732 CDK5R2Q13319 367 aa6.86□□□□□ -1.31
VPS13D-203ENST00000466732 MRPL58Q14197 206 aaKnown RBP6.86□□□□□ -1.31
VPS13D-203ENST00000466732 CPSF6Q16630 551 aaKnown RBP eCLIP6.86□□□□□ -1.31
VPS13D-203ENST00000466732 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.86□□□□□ -1.31
VPS13D-203ENST00000466732 PLPPR2Q96GM1 343 aa6.86□□□□□ -1.31
VPS13D-203ENST00000466732 PICK1Q9NRD5 415 aa6.86□□□□□ -1.31
VPS13D-203ENST00000466732 TLR6Q9Y2C9 796 aa6.86□□□□□ -1.31
VPS13D-203ENST00000466732 LEMD3Q9Y2U8 911 aa6.86□□□□□ -1.31
VPS13D-203ENST00000466732 FANCGO15287 622 aa6.85□□□□□ -1.31
VPS13D-203ENST00000466732 HOXA10P31260 410 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-203ENST00000466732 CDK8P49336 464 aa6.85□□□□□ -1.31
VPS13D-203ENST00000466732 ZBTB37Q5TC79 503 aa6.85□□□□□ -1.31
VPS13D-203ENST00000466732 INTS5Q6P9B9 1019 aaKnown RBP6.85□□□□□ -1.31
VPS13D-203ENST00000466732 OGFOD3Q6PK18 319 aa6.85□□□□□ -1.31
VPS13D-203ENST00000466732 ZNF765Q7L2R6 523 aa6.85□□□□□ -1.31
VPS13D-203ENST00000466732 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS13D-203ENST00000466732 PCMTD2Q9NV79 361 aa6.85□□□□□ -1.31
VPS13D-203ENST00000466732 PRAMEF27A3QJZ7 478 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 KIAA1324LA8MWY0 1029 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-203ENST00000466732 F6X3S4 739 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 CYP27A1Q02318 531 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 WIPI1Q5MNZ9 446 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-203ENST00000466732 DUSP27Q5VZP5 1158 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 CYFIP1Q7L576 1253 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 HDXQ7Z353 690 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 UBE3DQ7Z6J8 389 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 PHC3Q8NDX5 983 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 MIR1-1HGQ9H1L0 117 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 SNCAIPQ9Y6H5 919 aa6.84□□□□□ -1.31
VPS13D-203ENST00000466732 FAM87AP0C7U9 286 aa6.83□□□□□ -1.32
VPS13D-203ENST00000466732 FOSL1P15407 271 aa6.83□□□□□ -1.32
VPS13D-203ENST00000466732 XP32Q5T750 250 aa6.83□□□□□ -1.32
VPS13D-203ENST00000466732 PSMG3-AS1Q96PY0 264 aa6.83□□□□□ -1.32
VPS13D-203ENST00000466732 BCL11AQ9H165 835 aa6.83□□□□□ -1.32
VPS13D-203ENST00000466732 CYP26A1O43174 497 aa6.82□□□□□ -1.32
VPS13D-203ENST00000466732 SPINK2P20155 84 aa6.82□□□□□ -1.32
VPS13D-203ENST00000466732 DTX1Q86Y01 620 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms