RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 IL1RAPL2Q9NP60 686 aa26.71■■□□□ 1.87
LIME1-203ENST00000465591 DDTLA6NHG4 134 aaPredicted RBP26.7■■□□□ 1.86
LIME1-203ENST00000465591 ALDH1A1P00352 501 aa26.7■■□□□ 1.86
LIME1-203ENST00000465591 PDE3AQ14432 1141 aa26.7■■□□□ 1.86
LIME1-203ENST00000465591 NOM1Q5C9Z4 860 aaKnown RBP26.7■■□□□ 1.86
LIME1-203ENST00000465591 AACSQ86V21 672 aa26.7■■□□□ 1.86
LIME1-203ENST00000465591 ERC1Q8IUD2 1116 aa26.7■■□□□ 1.86
LIME1-203ENST00000465591 RHPN1Q8TCX5 695 aa26.7■■□□□ 1.86
LIME1-203ENST00000465591 PIH1D3Q9NQM4 214 aaKnown RBP26.7■■□□□ 1.86
LIME1-203ENST00000465591 CDK5RAP2Q96SN8 1893 aa26.7■■□□□ 1.86
LIME1-203ENST00000465591 LDHCP07864 332 aa26.69■■□□□ 1.86
LIME1-203ENST00000465591 GSTO1P78417 241 aa26.69■■□□□ 1.86
LIME1-203ENST00000465591 ERO1BQ86YB8 467 aa26.69■■□□□ 1.86
LIME1-203ENST00000465591 NDUFB9Q9Y6M9 179 aa26.69■■□□□ 1.86
LIME1-203ENST00000465591 CCL15-CCL14A0A0B4J2E2 113 aa26.68■■□□□ 1.86
LIME1-203ENST00000465591 APBB1O00213 710 aa26.68■■□□□ 1.86
LIME1-203ENST00000465591 CCL15Q16663 113 aa26.68■■□□□ 1.86
LIME1-203ENST00000465591 CTU1Q7Z7A3 348 aaKnown RBP26.68■■□□□ 1.86
LIME1-203ENST00000465591 ADGRA1Q86SQ6 560 aa26.68■■□□□ 1.86
LIME1-203ENST00000465591 IRF6O14896 467 aa26.67■■□□□ 1.86
LIME1-203ENST00000465591 CRHR2Q13324 411 aa26.67■■□□□ 1.86
LIME1-203ENST00000465591 CCDC85CA6NKD9 419 aa26.66■■□□□ 1.86
LIME1-203ENST00000465591 PHF20L1A8MW92 1017 aa26.66■■□□□ 1.86
LIME1-203ENST00000465591 GTF2A2P52657 109 aa26.66■■□□□ 1.86
LIME1-203ENST00000465591 HSP90AB4PQ58FF6 505 aa26.66■■□□□ 1.86
LIME1-203ENST00000465591 NAA16Q6N069 864 aaPredicted RBP26.66■■□□□ 1.86
LIME1-203ENST00000465591 ZSCAN29Q8IWY8 852 aaPredicted RBP26.66■■□□□ 1.86
LIME1-203ENST00000465591 FKTNO75072 461 aa26.65■■□□□ 1.86
LIME1-203ENST00000465591 HMMRO75330 724 aa26.65■■□□□ 1.86
LIME1-203ENST00000465591 PPIL2Q13356 520 aa26.65■■□□□ 1.86
LIME1-203ENST00000465591 FAM43AQ8N2R8 423 aa26.65■■□□□ 1.86
LIME1-203ENST00000465591 SH3RF3Q8TEJ3 882 aaPredicted RBP26.65■■□□□ 1.86
LIME1-203ENST00000465591 NPM3O75607 178 aaKnown RBP26.64■■□□□ 1.86
LIME1-203ENST00000465591 MAP3K10Q02779 954 aa26.64■■□□□ 1.86
LIME1-203ENST00000465591 NOL9Q5SY16 702 aaKnown RBP26.64■■□□□ 1.86
LIME1-203ENST00000465591 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.64■■□□□ 1.86
LIME1-203ENST00000465591 ANTXR1Q9H6X2 564 aa26.64■■□□□ 1.86
LIME1-203ENST00000465591 AATFQ9NY61 560 aaKnown RBP eCLIP26.64■■□□□ 1.86
LIME1-203ENST00000465591 FOCADQ5VW36 1801 aa26.64■■□□□ 1.85
LIME1-203ENST00000465591 SIPA1L1O43166 1804 aa26.63■■□□□ 1.85
LIME1-203ENST00000465591 PPATQ06203 517 aa26.63■■□□□ 1.85
LIME1-203ENST00000465591 OTUD7BQ6GQQ9 843 aa26.63■■□□□ 1.85
LIME1-203ENST00000465591 TEX11Q8IYF3 940 aa26.63■■□□□ 1.85
LIME1-203ENST00000465591 KIF1BPQ96EK5 621 aa26.63■■□□□ 1.85
LIME1-203ENST00000465591 CHMP4BQ9H444 224 aaKnown RBP26.63■■□□□ 1.85
LIME1-203ENST00000465591 DOCK1Q14185 1865 aa26.62■■□□□ 1.85
LIME1-203ENST00000465591 OSBPL5Q9H0X9 879 aaPredicted RBP26.62■■□□□ 1.85
LIME1-203ENST00000465591 PHIPQ8WWQ0 1821 aa26.61■■□□□ 1.85
LIME1-203ENST00000465591 FAM196BA6NMK8 535 aa26.61■■□□□ 1.85
LIME1-203ENST00000465591 MAP4K4O95819 1239 aaPredicted RBP26.61■■□□□ 1.85
LIME1-203ENST00000465591 PPP4CP60510 307 aa26.61■■□□□ 1.85
LIME1-203ENST00000465591 SNAPC2Q13487 334 aa26.61■■□□□ 1.85
LIME1-203ENST00000465591 COL2A1P02458 1487 aaPredicted RBP26.61■■□□□ 1.85
LIME1-203ENST00000465591 BTBD19C9JJ37 291 aa26.6■■□□□ 1.85
LIME1-203ENST00000465591 CETPP11597 493 aa26.6■■□□□ 1.85
LIME1-203ENST00000465591 CAP1Q01518 475 aa26.6■■□□□ 1.85
LIME1-203ENST00000465591 CLASRPQ8N2M8 674 aaKnown RBP26.6■■□□□ 1.85
LIME1-203ENST00000465591 BCL11AQ9H165 835 aa26.6■■□□□ 1.85
LIME1-203ENST00000465591 RAB11FIP3O75154 756 aa26.59■■□□□ 1.85
LIME1-203ENST00000465591 IDH1O75874 414 aaKnown RBP26.59■■□□□ 1.85
LIME1-203ENST00000465591 DYNLL1P63167 89 aaKnown RBP26.59■■□□□ 1.85
LIME1-203ENST00000465591 TAF1CQ15572 869 aaPredicted RBP26.59■■□□□ 1.85
LIME1-203ENST00000465591 FRMD4AQ9P2Q2 1039 aaPredicted RBP26.59■■□□□ 1.85
LIME1-203ENST00000465591 KCNH4Q9UQ05 1017 aa26.59■■□□□ 1.85
LIME1-203ENST00000465591 PTPRFP10586 1907 aa26.59■■□□□ 1.85
LIME1-203ENST00000465591 CYP7A1P22680 504 aa26.58■■□□□ 1.85
LIME1-203ENST00000465591 MOGSQ13724 837 aa26.58■■□□□ 1.85
LIME1-203ENST00000465591 SCYL3Q8IZE3 742 aa26.58■■□□□ 1.85
LIME1-203ENST00000465591 NOL10Q9BSC4 688 aaKnown RBP26.58■■□□□ 1.85
LIME1-203ENST00000465591 BAG3O95817 575 aa26.57■■□□□ 1.84
LIME1-203ENST00000465591 YTHDC1Q96MU7 727 aaKnown RBP26.57■■□□□ 1.84
LIME1-203ENST00000465591 ATAD5Q96QE3 1844 aa26.57■■□□□ 1.84
LIME1-203ENST00000465591 TBC1D12O60347 775 aa26.56■■□□□ 1.84
LIME1-203ENST00000465591 CCDC84Q86UT8 332 aaPredicted RBP26.56■■□□□ 1.84
LIME1-203ENST00000465591 MAPKAPK5Q8IW41 473 aa26.56■■□□□ 1.84
LIME1-203ENST00000465591 MAGEB6Q8N7X4 407 aa26.56■■□□□ 1.84
LIME1-203ENST00000465591 CD99L2Q8TCZ2 262 aa26.56■■□□□ 1.84
LIME1-203ENST00000465591 TGFBRAP1Q8WUH2 860 aa26.56■■□□□ 1.84
LIME1-203ENST00000465591 HPS5Q9UPZ3 1129 aa26.56■■□□□ 1.84
LIME1-203ENST00000465591 IGSF3O75054 1194 aa26.55■■□□□ 1.84
LIME1-203ENST00000465591 IFIT2P09913 472 aaKnown RBP26.55■■□□□ 1.84
LIME1-203ENST00000465591 PTPRAP18433 802 aa26.55■■□□□ 1.84
LIME1-203ENST00000465591 RRP1BQ14684 758 aaKnown RBP26.55■■□□□ 1.84
LIME1-203ENST00000465591 MIGA1Q8NAN2 632 aa26.55■■□□□ 1.84
LIME1-203ENST00000465591 ZFYVE28Q9HCC9 887 aa26.55■■□□□ 1.84
LIME1-203ENST00000465591 FLT1P17948 1338 aa26.55■■□□□ 1.84
LIME1-203ENST00000465591 ZSWIM8A7E2V4 1837 aa26.55■■□□□ 1.84
LIME1-203ENST00000465591 CTNND1O60716 968 aaKnown RBP26.54■■□□□ 1.84
LIME1-203ENST00000465591 PLCG2P16885 1265 aa26.54■■□□□ 1.84
LIME1-203ENST00000465591 PKN2Q16513 984 aaKnown RBP26.54■■□□□ 1.84
LIME1-203ENST00000465591 OTOP1Q7RTM1 612 aa26.54■■□□□ 1.84
LIME1-203ENST00000465591 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.54■■□□□ 1.842e-6■■■■■ 27.8
LIME1-203ENST00000465591 ZHX2Q9Y6X8 837 aa26.54■■□□□ 1.84
LIME1-203ENST00000465591 MYH1P12882 1939 aa26.54■■□□□ 1.84
LIME1-203ENST00000465591 SMARCA5O60264 1052 aaPredicted RBP26.53■■□□□ 1.84
LIME1-203ENST00000465591 SP3Q02447 781 aa26.53■■□□□ 1.84
LIME1-203ENST00000465591 EDC3Q96F86 508 aaKnown RBP26.53■■□□□ 1.84
LIME1-203ENST00000465591 PICK1Q9NRD5 415 aa26.53■■□□□ 1.84
LIME1-203ENST00000465591 TRIM17Q9Y577 477 aa26.53■■□□□ 1.84
LIME1-203ENST00000465591 FBXO46Q6PJ61 603 aaPredicted RBP26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms