RNA–Protein interactions for RNA: ENST00000463172.5

HDAC1-203, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 895 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-203ENST00000463172 CERS3Q8IU89 383 aa15.99■□□□□ 0.15
HDAC1-203ENST00000463172 EAF2Q96CJ1 260 aaPredicted RBP15.99■□□□□ 0.15
HDAC1-203ENST00000463172 MCOLN1Q9GZU1 580 aa15.99■□□□□ 0.15
HDAC1-203ENST00000463172 TESPA1A2RU30 521 aaPredicted RBP15.98■□□□□ 0.15
HDAC1-203ENST00000463172 GPR25O00155 361 aa15.98■□□□□ 0.15
HDAC1-203ENST00000463172 FKTNO75072 461 aa15.98■□□□□ 0.15
HDAC1-203ENST00000463172 PPATQ06203 517 aa15.98■□□□□ 0.15
HDAC1-203ENST00000463172 PPIL2Q13356 520 aa15.98■□□□□ 0.15
HDAC1-203ENST00000463172 SNAPC2Q13487 334 aa15.98■□□□□ 0.15
HDAC1-203ENST00000463172 TTF1Q15361 905 aaPredicted RBP15.98■□□□□ 0.15
HDAC1-203ENST00000463172 PKN2Q16513 984 aaKnown RBP15.98■□□□□ 0.15
HDAC1-203ENST00000463172 TEX11Q8IYF3 940 aa15.98■□□□□ 0.15
HDAC1-203ENST00000463172 ZKSCAN4Q969J2 545 aaPredicted RBP15.98■□□□□ 0.15
HDAC1-203ENST00000463172 SNCAIPQ9Y6H5 919 aa15.98■□□□□ 0.15
HDAC1-203ENST00000463172 CCL15-CCL14A0A0B4J2E2 113 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 APBB1O00213 710 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 CYP2E1P05181 493 aaPredicted RBP15.97■□□□□ 0.15
HDAC1-203ENST00000463172 ZAP70P43403 619 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 MAP3K12Q12852 859 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 CCL15Q16663 113 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 ZNF296Q8WUU4 475 aaPredicted RBP15.97■□□□□ 0.15
HDAC1-203ENST00000463172 IL1RAPL2Q9NP60 686 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 PICK1Q9NRD5 415 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 ZNF112Q9UJU3 913 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 RFX7Q2KHR2 1363 aa15.97■□□□□ 0.15
HDAC1-203ENST00000463172 IGF2BP3O00425 579 aaKnown RBP eCLIP15.96■□□□□ 0.15
HDAC1-203ENST00000463172 GJA5P36382 358 aa15.96■□□□□ 0.15
HDAC1-203ENST00000463172 RHBDL3P58872 404 aa15.96■□□□□ 0.15
HDAC1-203ENST00000463172 ARHGEF6Q15052 776 aa15.96■□□□□ 0.15
HDAC1-203ENST00000463172 NOL9Q5SY16 702 aaKnown RBP15.96■□□□□ 0.15
HDAC1-203ENST00000463172 ZCCHC17Q9NP64 241 aaKnown RBP15.96■□□□□ 0.15
HDAC1-203ENST00000463172 TLR7Q9NYK1 1049 aaKnown RBP15.96■□□□□ 0.15
HDAC1-203ENST00000463172 COL2A1P02458 1487 aaPredicted RBP15.96■□□□□ 0.14
HDAC1-203ENST00000463172 CCDC85CA6NKD9 419 aa15.95■□□□□ 0.14
HDAC1-203ENST00000463172 IDH1O75874 414 aaKnown RBP15.95■□□□□ 0.14
HDAC1-203ENST00000463172 INPP5BP32019 993 aa15.95■□□□□ 0.14
HDAC1-203ENST00000463172 MS4A4AQ96JQ5 239 aa15.95■□□□□ 0.14
HDAC1-203ENST00000463172 DHX36Q9H2U1 1008 aaKnown RBP15.95■□□□□ 0.14
HDAC1-203ENST00000463172 ZFYVE28Q9HCC9 887 aa15.95■□□□□ 0.14
HDAC1-203ENST00000463172 AATFQ9NY61 560 aaKnown RBP eCLIP15.95■□□□□ 0.14
HDAC1-203ENST00000463172 ATRNL1Q5VV63 1379 aa15.95■□□□□ 0.14
HDAC1-203ENST00000463172 MYO5AQ9Y4I1 1855 aaKnown RBP15.95■□□□□ 0.14
HDAC1-203ENST00000463172 TBC1D12O60347 775 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 PPP4CP60510 307 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 TAF1CQ15572 869 aaPredicted RBP15.94■□□□□ 0.14
HDAC1-203ENST00000463172 C20orf194Q5TEA3 1177 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 ZFPM1Q8IX07 1006 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 SCYL3Q8IZE3 742 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 ZNF384Q8TF68 577 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.94■□□□□ 0.14
HDAC1-203ENST00000463172 CNKSR2Q8WXI2 1034 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 BRI3BPQ8WY22 251 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 ERO1AQ96HE7 468 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 TRIM34Q9BYJ4 488 aa15.94■□□□□ 0.14
HDAC1-203ENST00000463172 OSBPL5Q9H0X9 879 aaPredicted RBP15.94■□□□□ 0.14
HDAC1-203ENST00000463172 DDX4Q9NQI0 724 aaKnown RBP15.94■□□□□ 0.14
HDAC1-203ENST00000463172 DDTLA6NHG4 134 aaPredicted RBP15.93■□□□□ 0.14
HDAC1-203ENST00000463172 IRF6O14896 467 aa15.93■□□□□ 0.14
HDAC1-203ENST00000463172 CTNND1O60716 968 aaKnown RBP15.93■□□□□ 0.14
HDAC1-203ENST00000463172 CYP7A1P22680 504 aa15.93■□□□□ 0.14
HDAC1-203ENST00000463172 CRHR2Q13324 411 aa15.93■□□□□ 0.14
HDAC1-203ENST00000463172 SIRT2Q8IXJ6 389 aa15.93■□□□□ 0.14
HDAC1-203ENST00000463172 SH3RF3Q8TEJ3 882 aaPredicted RBP15.93■□□□□ 0.14
HDAC1-203ENST00000463172 YTHDC1Q96MU7 727 aaKnown RBP15.93■□□□□ 0.14
HDAC1-203ENST00000463172 LRRCC1Q9C099 1032 aa15.93■□□□□ 0.14
HDAC1-203ENST00000463172 BCL11AQ9H165 835 aa15.93■□□□□ 0.14
HDAC1-203ENST00000463172 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.93■□□□□ 0.14
HDAC1-203ENST00000463172 PIH1D3Q9NQM4 214 aaKnown RBP15.93■□□□□ 0.14
HDAC1-203ENST00000463172 MAP3K10Q02779 954 aa15.92■□□□□ 0.14
HDAC1-203ENST00000463172 PTPN18Q99952 460 aa15.92■□□□□ 0.14
HDAC1-203ENST00000463172 PI4KBQ9UBF8 816 aa15.92■□□□□ 0.14
HDAC1-203ENST00000463172 HERC5Q9UII4 1024 aaKnown RBP15.92■□□□□ 0.14
HDAC1-203ENST00000463172 DOCK1Q14185 1865 aa15.92■□□□□ 0.14
HDAC1-203ENST00000463172 FOCADQ5VW36 1801 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 CXCL11O14625 94 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 HLA-DOAP06340 250 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 SP3Q02447 781 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 SH3BP5LQ7L8J4 393 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 MAGEB6Q8N7X4 407 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 GPATCH3Q96I76 525 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 TBC1D2Q9BYX2 928 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 KCNH4Q9UQ05 1017 aa15.91■□□□□ 0.14
HDAC1-203ENST00000463172 PHF20L1A8MW92 1017 aa15.9■□□□□ 0.14
HDAC1-203ENST00000463172 USP5P45974 858 aa15.9■□□□□ 0.14
HDAC1-203ENST00000463172 RRP1P56182 461 aaKnown RBP15.9■□□□□ 0.14
HDAC1-203ENST00000463172 KIF22Q14807 665 aa15.9■□□□□ 0.14
HDAC1-203ENST00000463172 FASTKD5Q7L8L6 764 aaKnown RBP15.9■□□□□ 0.14
HDAC1-203ENST00000463172 ANKRD23Q86SG2 305 aa15.9■□□□□ 0.14
HDAC1-203ENST00000463172 CRACR2BQ8N4Y2 399 aaPredicted RBP15.9■□□□□ 0.14
HDAC1-203ENST00000463172 TGFBRAP1Q8WUH2 860 aa15.9■□□□□ 0.14
HDAC1-203ENST00000463172 DNAJC2Q99543 621 aaKnown RBP15.9■□□□□ 0.14
HDAC1-203ENST00000463172 CDK5RAP2Q96SN8 1893 aa15.9■□□□□ 0.14
HDAC1-203ENST00000463172 PTPRAP18433 802 aa15.89■□□□□ 0.13
HDAC1-203ENST00000463172 FBXO46Q6PJ61 603 aaPredicted RBP15.89■□□□□ 0.13
HDAC1-203ENST00000463172 FOXP4Q8IVH2 680 aaPredicted RBP15.89■□□□□ 0.13
HDAC1-203ENST00000463172 MAPKAPK5Q8IW41 473 aa15.89■□□□□ 0.13
HDAC1-203ENST00000463172 FAM43AQ8N2R8 423 aa15.89■□□□□ 0.13
HDAC1-203ENST00000463172 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.89■□□□□ 0.134e-8■■□□□ 14
HDAC1-203ENST00000463172 ZHX2Q9Y6X8 837 aa15.89■□□□□ 0.13
HDAC1-203ENST00000463172 FLT1P17948 1338 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms