RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 SCYL3Q8IZE3 742 aa15.31■□□□□ 0.04
GPNMB-204ENST00000459927 XAGE2Q96GT9 111 aa15.31■□□□□ 0.04
GPNMB-204ENST00000459927 ABCF2Q9UG63 623 aa15.31■□□□□ 0.04
GPNMB-204ENST00000459927 GAKO14976 1311 aa15.31■□□□□ 0.04
GPNMB-204ENST00000459927 A0A0G2JLL6 359 aaPredicted RBP15.3■□□□□ 0.04
GPNMB-204ENST00000459927 ZSWIM8A7E2V4 1837 aa15.3■□□□□ 0.04
GPNMB-204ENST00000459927 CTNND1O60716 968 aaKnown RBP15.3■□□□□ 0.04
GPNMB-204ENST00000459927 GJB1P08034 283 aa15.3■□□□□ 0.04
GPNMB-204ENST00000459927 SLURP2P0DP57 97 aa15.3■□□□□ 0.04
GPNMB-204ENST00000459927 FXR1P51114 621 aaKnown RBP eCLIP15.3■□□□□ 0.04
GPNMB-204ENST00000459927 PRRT2Q7Z6L0 340 aaPredicted RBP15.3■□□□□ 0.04
GPNMB-204ENST00000459927 ZSCAN29Q8IWY8 852 aaPredicted RBP15.3■□□□□ 0.04
GPNMB-204ENST00000459927 NKX2-3Q8TAU0 364 aa15.3■□□□□ 0.04
GPNMB-204ENST00000459927 ARHGAP45Q92619 1136 aa15.3■□□□□ 0.04
GPNMB-204ENST00000459927 PARK7Q99497 189 aaKnown RBP15.3■□□□□ 0.04
GPNMB-204ENST00000459927 MEIS3Q99687 375 aa15.3■□□□□ 0.04
GPNMB-204ENST00000459927 PICK1Q9NRD5 415 aa15.3■□□□□ 0.04
GPNMB-204ENST00000459927 AKAP2Q9Y2D5 859 aa15.3■□□□□ 0.04
GPNMB-204ENST00000459927 ATRNL1Q5VV63 1379 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 MYPNQ86TC9 1320 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 GPR75-ASB3A0A0A6YYF3 556 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 CCL5P13501 91 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 GJA8P48165 433 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 FCGRTP55899 365 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 TFCP2Q12800 502 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 RASGRF1Q13972 1273 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 DPF3Q92784 378 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 DDX4Q9NQI0 724 aaKnown RBP15.29■□□□□ 0.04
GPNMB-204ENST00000459927 BIN2Q9UBW5 565 aaPredicted RBP15.29■□□□□ 0.04
GPNMB-204ENST00000459927 GABRQQ9UN88 632 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 MYH13Q9UKX3 1938 aa15.29■□□□□ 0.04
GPNMB-204ENST00000459927 PDS5AQ29RF7 1337 aaKnown RBP15.28■□□□□ 0.04
GPNMB-204ENST00000459927 MYH2Q9UKX2 1941 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 A0A1B0GUL7 405 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 TBC1D12O60347 775 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 RARSP54136 660 aaKnown RBP15.28■□□□□ 0.04
GPNMB-204ENST00000459927 PRKCZQ05513 592 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 ERICH6Q7L0X2 663 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 DZIP1Q86YF9 867 aaKnown RBP15.28■□□□□ 0.04
GPNMB-204ENST00000459927 SHISA4Q96DD7 197 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 NEUROD6Q96NK8 337 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 RNF208Q9H0X6 261 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 SLC45A1Q9Y2W3 748 aa15.28■□□□□ 0.04
GPNMB-204ENST00000459927 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.28■□□□□ 0.04
GPNMB-204ENST00000459927 SRGAP3O43295 1099 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 NPM3O75607 178 aaKnown RBP15.27■□□□□ 0.04
GPNMB-204ENST00000459927 GNAI3P08754 354 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 BTDP43251 543 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 RHBDL3P58872 404 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 UBXN2AP68543 259 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 MECOMQ03112 1051 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 GADL1Q6ZQY3 521 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 UBE2Q1Q7Z7E8 422 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 ZNF384Q8TF68 577 aa15.27■□□□□ 0.04
GPNMB-204ENST00000459927 SGPL1O95470 568 aa15.26■□□□□ 0.03
GPNMB-204ENST00000459927 LDHCP07864 332 aa15.26■□□□□ 0.03
GPNMB-204ENST00000459927 FLT3LGP49771 235 aa15.26■□□□□ 0.03
GPNMB-204ENST00000459927 PICALMQ13492 652 aa15.26■□□□□ 0.03
GPNMB-204ENST00000459927 MTX1Q13505 466 aa15.26■□□□□ 0.03
GPNMB-204ENST00000459927 MVPQ14764 893 aaKnown RBP15.26■□□□□ 0.03
GPNMB-204ENST00000459927 TBC1D9Q6ZT07 1266 aa15.26■□□□□ 0.03
GPNMB-204ENST00000459927 HMG20BQ9P0W2 317 aa15.26■□□□□ 0.03
GPNMB-204ENST00000459927 MROH7-TTC4A0A0A0MT08 1334 aa15.25■□□□□ 0.03
GPNMB-204ENST00000459927 ADCY3O60266 1144 aa15.25■□□□□ 0.03
GPNMB-204ENST00000459927 MAP4K4O95819 1239 aaPredicted RBP15.25■□□□□ 0.03
GPNMB-204ENST00000459927 SLAIN1Q8ND83 568 aa15.25■□□□□ 0.03
GPNMB-204ENST00000459927 PXYLP1Q8TE99 480 aa15.25■□□□□ 0.03
GPNMB-204ENST00000459927 NSUN4Q96CB9 384 aaKnown RBP15.25■□□□□ 0.03
GPNMB-204ENST00000459927 UNC93B1Q9H1C4 597 aa15.25■□□□□ 0.03
GPNMB-204ENST00000459927 TRIM75PA6NK02 468 aa15.24■□□□□ 0.03
GPNMB-204ENST00000459927 CCDC84Q86UT8 332 aaPredicted RBP15.24■□□□□ 0.03
GPNMB-204ENST00000459927 SPATA5Q8NB90 893 aa15.24■□□□□ 0.03
GPNMB-204ENST00000459927 U2AF1L4Q8WU68 220 aaKnown RBP15.24■□□□□ 0.03
GPNMB-204ENST00000459927 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.24■□□□□ 0.03
GPNMB-204ENST00000459927 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.24■□□□□ 0.03
GPNMB-204ENST00000459927 CEP290O15078 2479 aa15.24■□□□□ 0.03
GPNMB-204ENST00000459927 GSTO1P78417 241 aa15.23■□□□□ 0.03
GPNMB-204ENST00000459927 SPP2Q13103 211 aa15.23■□□□□ 0.03
GPNMB-204ENST00000459927 G3BP1Q13283 466 aaKnown RBP eCLIP15.23■□□□□ 0.03
GPNMB-204ENST00000459927 IRF5Q13568 498 aa15.23■□□□□ 0.03
GPNMB-204ENST00000459927 GORABQ5T7V8 394 aa15.23■□□□□ 0.03
GPNMB-204ENST00000459927 HTATIP2Q9BUP3 242 aa15.23■□□□□ 0.03
GPNMB-204ENST00000459927 OSBPL5Q9H0X9 879 aaPredicted RBP15.23■□□□□ 0.03
GPNMB-204ENST00000459927 AGTPBP1Q9UPW5 1226 aa15.23■□□□□ 0.03
GPNMB-204ENST00000459927 RFX7Q2KHR2 1363 aa15.23■□□□□ 0.03
GPNMB-204ENST00000459927 DOCK3Q8IZD9 2030 aa15.22■□□□□ 0.03
GPNMB-204ENST00000459927 TNPO2O14787 897 aaKnown RBP15.22■□□□□ 0.03
GPNMB-204ENST00000459927 IPO8O15397 1037 aaKnown RBP15.22■□□□□ 0.03
GPNMB-204ENST00000459927 TFRCP02786 760 aaKnown RBP15.22■□□□□ 0.03
GPNMB-204ENST00000459927 ELNP15502 786 aa15.22■□□□□ 0.03
GPNMB-204ENST00000459927 CAPN2P17655 700 aa15.22■□□□□ 0.03
GPNMB-204ENST00000459927 RRP1BQ14684 758 aaKnown RBP15.22■□□□□ 0.03
GPNMB-204ENST00000459927 TREML2Q5T2D2 321 aa15.22■□□□□ 0.03
GPNMB-204ENST00000459927 PI16Q6UXB8 463 aa15.22■□□□□ 0.03
GPNMB-204ENST00000459927 CHRDL2Q6WN34 429 aa15.22■□□□□ 0.03
GPNMB-204ENST00000459927 ANKRD13CQ8N6S4 541 aa15.22■□□□□ 0.03
GPNMB-204ENST00000459927 SMCR8Q8TEV9 937 aaPredicted RBP15.22■□□□□ 0.03
GPNMB-204ENST00000459927 MGAMO43451 1857 aa15.22■□□□□ 0.03
GPNMB-204ENST00000459927 PNMA6EA0A0J9YXQ4 647 aa15.21■□□□□ 0.03
GPNMB-204ENST00000459927 FAM196BA6NMK8 535 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms