RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 GJA3Q9Y6H8 435 aa12.3□□□□□ -0.44
USP39-210ENST00000459775 DICER1Q9UPY3 1922 aaKnown RBP12.3□□□□□ -0.44
USP39-210ENST00000459775 HSPA4P34932 840 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 CACNB3P54284 484 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 ADCK5Q3MIX3 580 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 CREB3L3Q68CJ9 461 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 NKX2-3Q8TAU0 364 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 SNX14Q9Y5W7 946 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 MROH7-TTC4A0A0A0MT08 1334 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 IQCA1LA6NCM1 817 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 SLC27A2O14975 620 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 CYP21A2P08686 494 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 VIL1P09327 827 aaKnown RBP12.29□□□□□ -0.44
USP39-210ENST00000459775 RBM5P52756 815 aaKnown RBP eCLIP12.29□□□□□ -0.44
USP39-210ENST00000459775 RSBN1LQ6PCB5 846 aaPredicted RBP12.29□□□□□ -0.44
USP39-210ENST00000459775 SCAF8Q9UPN6 1271 aaKnown RBP12.29□□□□□ -0.44
USP39-210ENST00000459775 ADAMTSL1Q8N6G6 1762 aa12.29□□□□□ -0.44
USP39-210ENST00000459775 EGFRP00533 1210 aa12.28□□□□□ -0.44
USP39-210ENST00000459775 CRKP46108 304 aa12.28□□□□□ -0.44
USP39-210ENST00000459775 GMLQ99445 158 aa12.28□□□□□ -0.44
USP39-210ENST00000459775 UPF3BQ9BZI7 483 aaKnown RBP12.28□□□□□ -0.44
USP39-210ENST00000459775 CD2BP2O95400 341 aaKnown RBP12.28□□□□□ -0.44
USP39-210ENST00000459775 CIAPIN1Q6FI81 312 aa12.28□□□□□ -0.44
USP39-210ENST00000459775 APOBEC3HQ6NTF7 200 aaKnown RBP12.28□□□□□ -0.44
USP39-210ENST00000459775 IFNL3Q8IZI9 196 aa12.28□□□□□ -0.44
USP39-210ENST00000459775 DSCC1Q9BVC3 393 aa12.28□□□□□ -0.44
USP39-210ENST00000459775 TACC3Q9Y6A5 838 aa12.28□□□□□ -0.44
USP39-210ENST00000459775 MYH7P12883 1935 aa12.28□□□□□ -0.44
USP39-210ENST00000459775 GPR75-ASB3A0A0A6YYF3 556 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 PATL2C9JE40 543 aaKnown RBP12.27□□□□□ -0.45
USP39-210ENST00000459775 FZD9O00144 591 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 SLURP2P0DP57 97 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 CYP2D6P10635 497 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 SLC4A3P48751 1232 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 RHBDL3P58872 404 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 RBM26Q5T8P6 1007 aaKnown RBP12.27□□□□□ -0.45
USP39-210ENST00000459775 STOX1Q6ZVD7 989 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 LDHDQ86WU2 507 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 TGFBRAP1Q8WUH2 860 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 PRMT6Q96LA8 375 aaPredicted RBP12.27□□□□□ -0.45
USP39-210ENST00000459775 TCEANC2Q96MN5 208 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 LARP6Q9BRS8 491 aaKnown RBP12.27□□□□□ -0.45
USP39-210ENST00000459775 NBPF3Q9H094 633 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 VPS33BQ9H267 617 aa12.27□□□□□ -0.45
USP39-210ENST00000459775 ZNF646O15015 1829 aaPredicted RBP12.27□□□□□ -0.45
USP39-210ENST00000459775 POTECB2RU33 542 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 FOXN1O15353 648 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 GSTO1P78417 241 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 CTDSPL2Q05D32 466 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 MAPKAPK5Q8IW41 473 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 TMTC2Q8N394 836 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 TEKT1Q969V4 418 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 SAP30BPQ9UHR5 308 aaKnown RBP12.26□□□□□ -0.45
USP39-210ENST00000459775 GAKO14976 1311 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 SCN4AP35499 1836 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 USP17L8P0C7I0 530 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 GMPSP49915 693 aaPredicted RBP12.26□□□□□ -0.45
USP39-210ENST00000459775 NFIAQ12857 509 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 PICALMQ13492 652 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 CFAP100Q494V2 611 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 CDC42EP5Q6NZY7 148 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 ZFPM1Q8IX07 1006 aa12.26□□□□□ -0.45
USP39-210ENST00000459775 U3KPZ7 1027 aaPredicted RBP12.26□□□□□ -0.45
USP39-210ENST00000459775 MINDY4BA8MYZ0 360 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 LDHCP07864 332 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 TDO2P48775 406 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 FAM163AQ96GL9 167 aaPredicted RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 JAKMIP1Q96N16 626 aaKnown RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 NAPBQ9H115 298 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 TDRD3Q9H7E2 651 aaKnown RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 DCP1AQ9NPI6 582 aaPredicted RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 DDX4Q9NQI0 724 aaKnown RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 USP40Q9NVE5 1235 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 MKRN1Q9UHC7 482 aaKnown RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 SUGT1Q9Y2Z0 365 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 PASKQ96RG2 1323 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 CCDC88AQ3V6T2 1871 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 CLRN2A0PK11 232 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 USP17L12C9JPN9 530 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 USP17L21D6R901 530 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 DDNO94850 711 aaPredicted RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 EIF6P56537 245 aaKnown RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 PPP4CP60510 307 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 TMCO4Q5TGY1 634 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 NOL8Q76FK4 1167 aaKnown RBP12.25□□□□□ -0.45
USP39-210ENST00000459775 CHST3Q7LGC8 479 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 SAMD7Q7Z3H4 446 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 TBC1D10CQ8IV04 446 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 TEX11Q8IYF3 940 aa12.25□□□□□ -0.45
USP39-210ENST00000459775 ASTN2O75129 1339 aaPredicted RBP12.24□□□□□ -0.45
USP39-210ENST00000459775 BAG3O95817 575 aa12.24□□□□□ -0.45
USP39-210ENST00000459775 USP5P45974 858 aa12.24□□□□□ -0.45
USP39-210ENST00000459775 FKBP1AP62942 108 aaKnown RBP12.24□□□□□ -0.45
USP39-210ENST00000459775 TCP10Q12799 353 aa12.24□□□□□ -0.45
USP39-210ENST00000459775 NBPF9Q3BBW0 867 aa12.24□□□□□ -0.45
USP39-210ENST00000459775 CTR9Q6PD62 1173 aa12.24□□□□□ -0.45
USP39-210ENST00000459775 HHIPL2Q6UWX4 724 aa12.24□□□□□ -0.45
USP39-210ENST00000459775 L3MBTL3Q96JM7 780 aaPredicted RBP12.24□□□□□ -0.45
USP39-210ENST00000459775 NOL10Q9BSC4 688 aaKnown RBP12.24□□□□□ -0.45
USP39-210ENST00000459775 CRNKL1Q9BZJ0 848 aaKnown RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms