RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 ABHD8Q96I13 439 aa19.71■□□□□ 0.75
COL7A1-203ENST00000459756 NOL10Q9BSC4 688 aaKnown RBP19.71■□□□□ 0.75
COL7A1-203ENST00000459756 IL1RAPL2Q9NP60 686 aa19.71■□□□□ 0.75
COL7A1-203ENST00000459756 ZNF112Q9UJU3 913 aa19.71■□□□□ 0.75
COL7A1-203ENST00000459756 DOCK2Q92608 1830 aa19.7■□□□□ 0.74
COL7A1-203ENST00000459756 IGF2BP3O00425 579 aaKnown RBP eCLIP19.7■□□□□ 0.74
COL7A1-203ENST00000459756 ZAP70P43403 619 aa19.7■□□□□ 0.74
COL7A1-203ENST00000459756 GTF2A2P52657 109 aa19.7■□□□□ 0.74
COL7A1-203ENST00000459756 ZSCAN29Q8IWY8 852 aaPredicted RBP19.7■□□□□ 0.74
COL7A1-203ENST00000459756 CNKSR2Q8WXI2 1034 aa19.7■□□□□ 0.74
COL7A1-203ENST00000459756 OTUD5Q96G74 571 aa19.7■□□□□ 0.74
COL7A1-203ENST00000459756 MS4A4AQ96JQ5 239 aa19.7■□□□□ 0.74
COL7A1-203ENST00000459756 PICALMQ13492 652 aa19.69■□□□□ 0.74
COL7A1-203ENST00000459756 DGKZQ13574 1117 aa19.69■□□□□ 0.74
COL7A1-203ENST00000459756 DDX4Q9NQI0 724 aaKnown RBP19.69■□□□□ 0.74
COL7A1-203ENST00000459756 ATRNL1Q5VV63 1379 aa19.69■□□□□ 0.74
COL7A1-203ENST00000459756 GPR25O00155 361 aa19.68■□□□□ 0.74
COL7A1-203ENST00000459756 APBB1O00213 710 aa19.68■□□□□ 0.74
COL7A1-203ENST00000459756 BAG3O95817 575 aa19.68■□□□□ 0.74
COL7A1-203ENST00000459756 INPP5BP32019 993 aa19.68■□□□□ 0.74
COL7A1-203ENST00000459756 SH3BP5LQ7L8J4 393 aa19.68■□□□□ 0.74
COL7A1-203ENST00000459756 PTPN18Q99952 460 aa19.68■□□□□ 0.74
COL7A1-203ENST00000459756 MCOLN1Q9GZU1 580 aa19.68■□□□□ 0.74
COL7A1-203ENST00000459756 PIH1D3Q9NQM4 214 aaKnown RBP19.68■□□□□ 0.74
COL7A1-203ENST00000459756 DDTLA6NHG4 134 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-203ENST00000459756 IFIT2P09913 472 aaKnown RBP19.67■□□□□ 0.74
COL7A1-203ENST00000459756 PLCG2P16885 1265 aa19.67■□□□□ 0.74
COL7A1-203ENST00000459756 PPP4CP60510 307 aa19.67■□□□□ 0.74
COL7A1-203ENST00000459756 MAP3K10Q02779 954 aa19.67■□□□□ 0.74
COL7A1-203ENST00000459756 PPATQ06203 517 aa19.67■□□□□ 0.74
COL7A1-203ENST00000459756 PPIL2Q13356 520 aa19.67■□□□□ 0.74
COL7A1-203ENST00000459756 NOL9Q5SY16 702 aaKnown RBP19.67■□□□□ 0.74
COL7A1-203ENST00000459756 CTU1Q7Z7A3 348 aaKnown RBP19.67■□□□□ 0.74
COL7A1-203ENST00000459756 ZNF296Q8WUU4 475 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-203ENST00000459756 MYO5AQ9Y4I1 1855 aaKnown RBP19.67■□□□□ 0.74
COL7A1-203ENST00000459756 COL2A1P02458 1487 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-203ENST00000459756 CCL15-CCL14A0A0B4J2E2 113 aa19.66■□□□□ 0.74
COL7A1-203ENST00000459756 SNAPC2Q13487 334 aa19.66■□□□□ 0.74
COL7A1-203ENST00000459756 CCL15Q16663 113 aa19.66■□□□□ 0.74
COL7A1-203ENST00000459756 TMED8Q6PL24 325 aaPredicted RBP19.66■□□□□ 0.74
COL7A1-203ENST00000459756 TEX11Q8IYF3 940 aa19.66■□□□□ 0.74
COL7A1-203ENST00000459756 SH3RF3Q8TEJ3 882 aaPredicted RBP19.66■□□□□ 0.74
COL7A1-203ENST00000459756 BRI3BPQ8WY22 251 aa19.66■□□□□ 0.74
COL7A1-203ENST00000459756 R3HDMLQ9H3Y0 253 aa19.66■□□□□ 0.74
COL7A1-203ENST00000459756 PHF20L1A8MW92 1017 aa19.65■□□□□ 0.74
COL7A1-203ENST00000459756 IRF6O14896 467 aa19.65■□□□□ 0.74
COL7A1-203ENST00000459756 FKTNO75072 461 aa19.65■□□□□ 0.74
COL7A1-203ENST00000459756 IDH1O75874 414 aaKnown RBP19.65■□□□□ 0.74
COL7A1-203ENST00000459756 CETPP11597 493 aa19.65■□□□□ 0.74
COL7A1-203ENST00000459756 OSBPL5Q9H0X9 879 aaPredicted RBP19.65■□□□□ 0.74
COL7A1-203ENST00000459756 AATFQ9NY61 560 aaKnown RBP eCLIP19.65■□□□□ 0.74
COL7A1-203ENST00000459756 MAP3K12Q12852 859 aa19.64■□□□□ 0.73
COL7A1-203ENST00000459756 CRHR2Q13324 411 aa19.64■□□□□ 0.73
COL7A1-203ENST00000459756 ADGRA1Q86SQ6 560 aa19.64■□□□□ 0.73
COL7A1-203ENST00000459756 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.64■□□□□ 0.73
COL7A1-203ENST00000459756 TBC1D12O60347 775 aa19.63■□□□□ 0.73
COL7A1-203ENST00000459756 CYP7A1P22680 504 aa19.63■□□□□ 0.73
COL7A1-203ENST00000459756 RRP1P56182 461 aaKnown RBP19.63■□□□□ 0.73
COL7A1-203ENST00000459756 TTF1Q15361 905 aaPredicted RBP19.63■□□□□ 0.73
COL7A1-203ENST00000459756 CERS3Q8IU89 383 aa19.63■□□□□ 0.73
COL7A1-203ENST00000459756 ANTXR1Q9H6X2 564 aa19.63■□□□□ 0.73
COL7A1-203ENST00000459756 ZCCHC17Q9NP64 241 aaKnown RBP19.63■□□□□ 0.73
COL7A1-203ENST00000459756 NDUFB9Q9Y6M9 179 aa19.63■□□□□ 0.73
COL7A1-203ENST00000459756 PKN2Q16513 984 aaKnown RBP19.62■□□□□ 0.73
COL7A1-203ENST00000459756 SCYL3Q8IZE3 742 aa19.62■□□□□ 0.73
COL7A1-203ENST00000459756 MAGEB6Q8N7X4 407 aa19.62■□□□□ 0.73
COL7A1-203ENST00000459756 LRRCC1Q9C099 1032 aa19.62■□□□□ 0.73
COL7A1-203ENST00000459756 PICK1Q9NRD5 415 aa19.62■□□□□ 0.73
COL7A1-203ENST00000459756 KCNH4Q9UQ05 1017 aa19.62■□□□□ 0.73
COL7A1-203ENST00000459756 FOCADQ5VW36 1801 aa19.61■□□□□ 0.73
COL7A1-203ENST00000459756 CTNND1O60716 968 aaKnown RBP19.61■□□□□ 0.73
COL7A1-203ENST00000459756 FAM43AQ8N2R8 423 aa19.61■□□□□ 0.73
COL7A1-203ENST00000459756 BCL11AQ9H165 835 aa19.61■□□□□ 0.73
COL7A1-203ENST00000459756 DHX36Q9H2U1 1008 aaKnown RBP19.61■□□□□ 0.73
COL7A1-203ENST00000459756 CDK5RAP2Q96SN8 1893 aa19.6■□□□□ 0.73
COL7A1-203ENST00000459756 TAF1CQ15572 869 aaPredicted RBP19.6■□□□□ 0.73
COL7A1-203ENST00000459756 TGFBRAP1Q8WUH2 860 aa19.6■□□□□ 0.73
COL7A1-203ENST00000459756 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.6■□□□□ 0.73
COL7A1-203ENST00000459756 ZFYVE28Q9HCC9 887 aa19.6■□□□□ 0.73
COL7A1-203ENST00000459756 PI4KBQ9UBF8 816 aa19.6■□□□□ 0.73
COL7A1-203ENST00000459756 FLT1P17948 1338 aa19.59■□□□□ 0.73
COL7A1-203ENST00000459756 DOCK1Q14185 1865 aa19.59■□□□□ 0.73
COL7A1-203ENST00000459756 CCDC85CA6NKD9 419 aa19.59■□□□□ 0.73
COL7A1-203ENST00000459756 BTBD19C9JJ37 291 aa19.59■□□□□ 0.73
COL7A1-203ENST00000459756 CXCL11O14625 94 aa19.59■□□□□ 0.73
COL7A1-203ENST00000459756 PTPRAP18433 802 aa19.59■□□□□ 0.73
COL7A1-203ENST00000459756 ATP5JP18859 108 aa19.59■□□□□ 0.73
COL7A1-203ENST00000459756 DCTPP1Q9H773 170 aa19.59■□□□□ 0.73
COL7A1-203ENST00000459756 HERC5Q9UII4 1024 aaKnown RBP19.59■□□□□ 0.73
COL7A1-203ENST00000459756 GOLIM4O00461 696 aa19.58■□□□□ 0.72
COL7A1-203ENST00000459756 SLURP2P0DP57 97 aa19.58■□□□□ 0.72
COL7A1-203ENST00000459756 DYNLL1P63167 89 aaKnown RBP19.58■□□□□ 0.72
COL7A1-203ENST00000459756 MAPKAPK5Q8IW41 473 aa19.58■□□□□ 0.72
COL7A1-203ENST00000459756 MIGA1Q8NAN2 632 aa19.58■□□□□ 0.72
COL7A1-203ENST00000459756 DNAJC2Q99543 621 aaKnown RBP19.58■□□□□ 0.72
COL7A1-203ENST00000459756 ZHX2Q9Y6X8 837 aa19.58■□□□□ 0.72
COL7A1-203ENST00000459756 SP3Q02447 781 aa19.57■□□□□ 0.72
COL7A1-203ENST00000459756 SLC9C2Q5TAH2 1124 aa19.57■□□□□ 0.72
COL7A1-203ENST00000459756 ANKRD23Q86SG2 305 aa19.57■□□□□ 0.72
COL7A1-203ENST00000459756 ERO1AQ96HE7 468 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 169.5 ms