RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ADGRA1Q86SQ6 560 aa22.74■■□□□ 1.23
USP39-209ENST00000458268 TNS4Q8IZW8 715 aa22.74■■□□□ 1.23
USP39-209ENST00000458268 MIGA1Q8NAN2 632 aa22.74■■□□□ 1.23
USP39-209ENST00000458268 OPTNQ96CV9 577 aa22.74■■□□□ 1.23
USP39-209ENST00000458268 EDC3Q96F86 508 aaKnown RBP22.74■■□□□ 1.23
USP39-209ENST00000458268 OTUD5Q96G74 571 aa22.74■■□□□ 1.23
USP39-209ENST00000458268 IDI2Q9BXS1 227 aa22.74■■□□□ 1.23
USP39-209ENST00000458268 DCTPP1Q9H773 170 aa22.74■■□□□ 1.23
USP39-209ENST00000458268 CDK5RAP2Q96SN8 1893 aa22.73■■□□□ 1.23
USP39-209ENST00000458268 DYNLL1P63167 89 aaKnown RBP22.73■■□□□ 1.23
USP39-209ENST00000458268 SREBF2Q12772 1141 aa22.73■■□□□ 1.23
USP39-209ENST00000458268 MAP3K12Q12852 859 aa22.73■■□□□ 1.23
USP39-209ENST00000458268 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.73■■□□□ 1.23
USP39-209ENST00000458268 DDTLA6NHG4 134 aaPredicted RBP22.72■■□□□ 1.23
USP39-209ENST00000458268 SLURP2P0DP57 97 aa22.72■■□□□ 1.23
USP39-209ENST00000458268 INPP5BP32019 993 aa22.72■■□□□ 1.23
USP39-209ENST00000458268 GJA5P36382 358 aa22.72■■□□□ 1.23
USP39-209ENST00000458268 MAPKAPK5Q8IW41 473 aa22.72■■□□□ 1.23
USP39-209ENST00000458268 ZBTB47Q9UFB7 747 aaPredicted RBP22.72■■□□□ 1.23
USP39-209ENST00000458268 RFX7Q2KHR2 1363 aa22.72■■□□□ 1.23
USP39-209ENST00000458268 IRX6P78412 446 aaPredicted RBP22.71■■□□□ 1.23
USP39-209ENST00000458268 TTF1Q15361 905 aaPredicted RBP22.71■■□□□ 1.23
USP39-209ENST00000458268 SLC4A8Q2Y0W8 1093 aa22.71■■□□□ 1.23
USP39-209ENST00000458268 SH3BP5LQ7L8J4 393 aa22.71■■□□□ 1.23
USP39-209ENST00000458268 TGFBRAP1Q8WUH2 860 aa22.71■■□□□ 1.23
USP39-209ENST00000458268 PRDM10Q9NQV6 1147 aa22.71■■□□□ 1.23
USP39-209ENST00000458268 MANSC4A6NHS7 340 aaPredicted RBP22.7■■□□□ 1.22
USP39-209ENST00000458268 FAM196BA6NMK8 535 aa22.7■■□□□ 1.22
USP39-209ENST00000458268 ZBTB48P10074 688 aaPredicted RBP22.7■■□□□ 1.22
USP39-209ENST00000458268 TSHZ3Q63HK5 1081 aa22.7■■□□□ 1.22
USP39-209ENST00000458268 REM2Q8IYK8 340 aaPredicted RBP22.7■■□□□ 1.22
USP39-209ENST00000458268 EXOC6Q8TAG9 804 aa22.7■■□□□ 1.22
USP39-209ENST00000458268 SNCAIPQ9Y6H5 919 aa22.7■■□□□ 1.22
USP39-209ENST00000458268 TBC1D8O95759 1140 aa22.69■■□□□ 1.22
USP39-209ENST00000458268 PLCG2P16885 1265 aa22.69■■□□□ 1.22
USP39-209ENST00000458268 GPATCH3Q96I76 525 aa22.69■■□□□ 1.22
USP39-209ENST00000458268 OSBPL5Q9H0X9 879 aaPredicted RBP22.69■■□□□ 1.22
USP39-209ENST00000458268 PAG1Q9NWQ8 432 aa22.69■■□□□ 1.22
USP39-209ENST00000458268 UNCXA6NJT0 531 aa22.68■■□□□ 1.22
USP39-209ENST00000458268 ATP5JP18859 108 aa22.68■■□□□ 1.22
USP39-209ENST00000458268 SLC9C2Q5TAH2 1124 aa22.68■■□□□ 1.22
USP39-209ENST00000458268 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.68■■□□□ 1.22
USP39-209ENST00000458268 SAP30BPQ9UHR5 308 aaKnown RBP22.68■■□□□ 1.22
USP39-209ENST00000458268 FOCADQ5VW36 1801 aa22.68■■□□□ 1.22
USP39-209ENST00000458268 MYH7P12883 1935 aa22.67■■□□□ 1.22
USP39-209ENST00000458268 USP5P45974 858 aa22.67■■□□□ 1.22
USP39-209ENST00000458268 SAGE1Q9NXZ1 904 aa22.67■■□□□ 1.22
USP39-209ENST00000458268 MYH1P12882 1939 aa22.67■■□□□ 1.22
USP39-209ENST00000458268 CAPN15O75808 1086 aa22.66■■□□□ 1.22
USP39-209ENST00000458268 PDE6AP16499 860 aa22.66■■□□□ 1.22
USP39-209ENST00000458268 TM4SF4P48230 202 aa22.66■■□□□ 1.22
USP39-209ENST00000458268 ERO1BQ86YB8 467 aa22.66■■□□□ 1.22
USP39-209ENST00000458268 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.66■■□□□ 1.22
USP39-209ENST00000458268 ECHDC1Q9NTX5 307 aa22.66■■□□□ 1.22
USP39-209ENST00000458268 FLT1P17948 1338 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 ZNF532Q9HCE3 1301 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 CCL15-CCL14A0A0B4J2E2 113 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 SPDYE5A6NIY4 337 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 MAP4K4O95819 1239 aaPredicted RBP22.65■■□□□ 1.22
USP39-209ENST00000458268 PPP4CP60510 307 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 CCL15Q16663 113 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 ANKRD45Q5TZF3 282 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 HAUS7Q99871 368 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 TRIM34Q9BYJ4 488 aa22.65■■□□□ 1.22
USP39-209ENST00000458268 DOCK1Q14185 1865 aa22.64■■□□□ 1.22
USP39-209ENST00000458268 MAGEB6P1A0A0J9YX57 407 aa22.64■■□□□ 1.21
USP39-209ENST00000458268 IGF2BP3O00425 579 aaKnown RBP eCLIP22.64■■□□□ 1.21
USP39-209ENST00000458268 SLFNL1Q499Z3 407 aa22.64■■□□□ 1.21
USP39-209ENST00000458268 IFNL1Q8IU54 200 aa22.64■■□□□ 1.21
USP39-209ENST00000458268 ATRNL1Q5VV63 1379 aa22.63■■□□□ 1.21
USP39-209ENST00000458268 NAV1Q8NEY1 1877 aa22.63■■□□□ 1.21
USP39-209ENST00000458268 CRACR2BQ8N4Y2 399 aaPredicted RBP22.63■■□□□ 1.21
USP39-209ENST00000458268 OTUD7AQ8TE49 926 aaPredicted RBP22.63■■□□□ 1.21
USP39-209ENST00000458268 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.63■■□□□ 1.211e-6■■■□□ 14.8
USP39-209ENST00000458268 PICK1Q9NRD5 415 aa22.63■■□□□ 1.21
USP39-209ENST00000458268 PALD1Q9ULE6 856 aa22.63■■□□□ 1.21
USP39-209ENST00000458268 ATAD5Q96QE3 1844 aa22.63■■□□□ 1.21
USP39-209ENST00000458268 LAMB1P07942 1786 aa22.63■■□□□ 1.21
USP39-209ENST00000458268 IRF6O14896 467 aa22.62■■□□□ 1.21
USP39-209ENST00000458268 GTF2A2P52657 109 aa22.62■■□□□ 1.21
USP39-209ENST00000458268 INHBEP58166 350 aa22.62■■□□□ 1.21
USP39-209ENST00000458268 OTUD7BQ6GQQ9 843 aa22.62■■□□□ 1.21
USP39-209ENST00000458268 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.62■■□□□ 1.21
USP39-209ENST00000458268 ZNF112Q9UJU3 913 aa22.62■■□□□ 1.21
USP39-209ENST00000458268 SIPA1L1O43166 1804 aa22.61■■□□□ 1.21
USP39-209ENST00000458268 IGSF3O75054 1194 aa22.61■■□□□ 1.21
USP39-209ENST00000458268 PPIL2Q13356 520 aa22.61■■□□□ 1.21
USP39-209ENST00000458268 B4GALNT3Q6L9W6 998 aa22.61■■□□□ 1.21
USP39-209ENST00000458268 CCDC84Q86UT8 332 aaPredicted RBP22.61■■□□□ 1.21
USP39-209ENST00000458268 BRI3BPQ8WY22 251 aa22.61■■□□□ 1.21
USP39-209ENST00000458268 NPM3O75607 178 aaKnown RBP22.6■■□□□ 1.21
USP39-209ENST00000458268 ALDH1A1P00352 501 aa22.6■■□□□ 1.21
USP39-209ENST00000458268 CHGBP05060 677 aa22.6■■□□□ 1.21
USP39-209ENST00000458268 HLA-DOAP06340 250 aa22.6■■□□□ 1.21
USP39-209ENST00000458268 SNAPC2Q13487 334 aa22.6■■□□□ 1.21
USP39-209ENST00000458268 SCYL3Q8IZE3 742 aa22.6■■□□□ 1.21
USP39-209ENST00000458268 R3HDMLQ9H3Y0 253 aa22.6■■□□□ 1.21
USP39-209ENST00000458268 ARMT1Q9H993 441 aa22.6■■□□□ 1.21
USP39-209ENST00000458268 COL2A1P02458 1487 aaPredicted RBP22.6■■□□□ 1.21
USP39-209ENST00000458268 PHF20L1A8MW92 1017 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms