RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 LMBRD1Q9NUN5 540 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 AATFQ9NY61 560 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS50-205ENST00000441602 ORC3Q9UBD5 711 aaPredicted RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 COL1A1P02452 1464 aaPredicted RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 LETM1O95202 739 aaPredicted RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 POLR3DP05423 398 aaPredicted RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 PRDX5P30044 214 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 GNL2Q13823 731 aaKnown RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 MFSD14BQ5SR56 506 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 CATIPQ7Z7H3 387 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 SGMS1Q86VZ5 419 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 ANP32BQ92688 251 aaKnown RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 C8orf76Q96K31 380 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 GZF1Q9H116 711 aaPredicted RBP7.04□□□□□ -1.28
VPS50-205ENST00000441602 IRS2Q9Y4H2 1338 aa7.04□□□□□ -1.28
VPS50-205ENST00000441602 TNS1Q9HBL0 1735 aaKnown RBP7.03□□□□□ -1.28
VPS50-205ENST00000441602 ORC4O43929 436 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 XBP1P17861 261 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 ANTXR2P58335 489 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 SAFBQ15424 915 aaKnown RBP eCLIP7.03□□□□□ -1.28
VPS50-205ENST00000441602 RTN1Q16799 776 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 KLHL34Q8N239 644 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 SDR42E1Q8WUS8 393 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 MCM9Q9NXL9 1143 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 USP17L12C9JPN9 530 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 USP17L21D6R901 530 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 RIMBP2O15034 1052 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 RANBP6O60518 1105 aaKnown RBP7.03□□□□□ -1.28
VPS50-205ENST00000441602 IARSP41252 1262 aaKnown RBP7.03□□□□□ -1.28
VPS50-205ENST00000441602 UBE2HP62256 183 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 SSRP1Q08945 709 aaKnown RBP7.03□□□□□ -1.28
VPS50-205ENST00000441602 SOGA3Q5TF21 947 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 TXNRD3Q86VQ6 643 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 TEX11Q8IYF3 940 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 RBM28Q9NW13 759 aaKnown RBP7.03□□□□□ -1.28
VPS50-205ENST00000441602 NEDD4P46934 1319 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 TIAM2Q8IVF5 1701 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 CASZ1Q86V15 1759 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 FIBPO43427 364 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 JAK2O60674 1132 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 ST3GAL1Q11201 340 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 PPP4R3BQ5MIZ7 849 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 APOA5Q6Q788 366 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 PODNQ7Z5L7 613 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 RGS17Q9UGC6 210 aaPredicted RBP7.03□□□□□ -1.28
VPS50-205ENST00000441602 POLLQ9UGP5 575 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 MYH13Q9UKX3 1938 aa7.03□□□□□ -1.28
VPS50-205ENST00000441602 LAMA4Q16363 1823 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 POLD1P28340 1107 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 BTDP43251 543 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 GTF2IP78347 998 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 CYB5R4Q7L1T6 521 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 MICU3Q86XE3 530 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 FAM163AQ96GL9 167 aaPredicted RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 MKNK2Q9HBH9 465 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 DCP1AQ9NPI6 582 aaPredicted RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 STK36Q9NRP7 1315 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 A0A0G2JLW4 131 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 DDAH1O94760 285 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 FKBP1AP62942 108 aaKnown RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 IFIT1BQ5T764 474 aaKnown RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 CTR9Q6PD62 1173 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 BRAPQ7Z569 592 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 ZNF444Q8N0Y2 327 aaPredicted RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 CTCFLQ8NI51 663 aaPredicted RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 LY9Q9HBG7 655 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 ZSWIM5Q9P217 1185 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 RBM27Q9P2N5 1060 aaKnown RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 JAG2Q9Y219 1238 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 NRXN2Q9P2S2 1712 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 COL4A1P02462 1669 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 GPR75-ASB3A0A0A6YYF3 556 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 TSPY2A6NKD2 308 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 KIF5BP33176 963 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 MRE11P49959 708 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 FOXD4L6Q3SYB3 417 aaPredicted RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 CAVIN1Q6NZI2 390 aaKnown RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 FOXD4L3Q6VB84 417 aaPredicted RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 ADGRA1Q86SQ6 560 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 TTC6Q86TZ1 520 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 USP48Q86UV5 1035 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 IGDCC4Q8TDY8 1250 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 SPATA32Q96LK8 384 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 GPR101Q96P66 508 aaPredicted RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 ZSCAN10Q96SZ4 725 aaPredicted RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 NBPF3Q9H094 633 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 NCOA5Q9HCD5 579 aaKnown RBP7.02□□□□□ -1.29
VPS50-205ENST00000441602 BRPF3Q9ULD4 1205 aa7.02□□□□□ -1.29
VPS50-205ENST00000441602 TAF1P21675 1872 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 ELP1O95163 1332 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 WTIPA6NIX2 430 aaPredicted RBP7.01□□□□□ -1.29
VPS50-205ENST00000441602 GNAQP50148 359 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 CCDC93Q567U6 631 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 CDC37L1Q7L3B6 337 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 FERMT3Q86UX7 667 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 RTKN2Q8IZC4 609 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 ZNF654Q8IZM8 581 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 NUP133Q8WUM0 1156 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 ALG1Q9BT22 464 aa7.01□□□□□ -1.29
VPS50-205ENST00000441602 ANO8Q9HCE9 1232 aaPredicted RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms