RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.51■□□□□ 0.55
LIMS3-201ENST00000437679 OPTNQ96CV9 577 aa18.51■□□□□ 0.55
LIMS3-201ENST00000437679 DCTPP1Q9H773 170 aa18.51■□□□□ 0.55
LIMS3-201ENST00000437679 NDUFB9Q9Y6M9 179 aa18.51■□□□□ 0.55
LIMS3-201ENST00000437679 NPM3O75607 178 aaKnown RBP18.5■□□□□ 0.55
LIMS3-201ENST00000437679 TTF1Q15361 905 aaPredicted RBP18.5■□□□□ 0.55
LIMS3-201ENST00000437679 DDX4Q9NQI0 724 aaKnown RBP18.5■□□□□ 0.55
LIMS3-201ENST00000437679 AATFQ9NY61 560 aaKnown RBP eCLIP18.5■□□□□ 0.55
LIMS3-201ENST00000437679 DOCK2Q92608 1830 aa18.49■□□□□ 0.55
LIMS3-201ENST00000437679 SMARCA5O60264 1052 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-201ENST00000437679 CYP7A1P22680 504 aa18.49■□□□□ 0.55
LIMS3-201ENST00000437679 GJA5P36382 358 aa18.49■□□□□ 0.55
LIMS3-201ENST00000437679 PPP4CP60510 307 aa18.49■□□□□ 0.55
LIMS3-201ENST00000437679 SH3RF3Q8TEJ3 882 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-201ENST00000437679 ZKSCAN4Q969J2 545 aaPredicted RBP18.49■□□□□ 0.55
LIMS3-201ENST00000437679 ANTXR1Q9H6X2 564 aa18.49■□□□□ 0.55
LIMS3-201ENST00000437679 PCDHB15Q9Y5E8 787 aa18.49■□□□□ 0.55
LIMS3-201ENST00000437679 CASP8AP2Q9UKL3 1982 aa18.49■□□□□ 0.55
LIMS3-201ENST00000437679 TMED8Q6PL24 325 aaPredicted RBP18.48■□□□□ 0.55
LIMS3-201ENST00000437679 SH3BP5LQ7L8J4 393 aa18.48■□□□□ 0.55
LIMS3-201ENST00000437679 ERO1BQ86YB8 467 aa18.48■□□□□ 0.55
LIMS3-201ENST00000437679 MAGEB6Q8N7X4 407 aa18.48■□□□□ 0.55
LIMS3-201ENST00000437679 OTUD5Q96G74 571 aa18.48■□□□□ 0.55
LIMS3-201ENST00000437679 DNAJC2Q99543 621 aaKnown RBP18.48■□□□□ 0.55
LIMS3-201ENST00000437679 ZNF112Q9UJU3 913 aa18.48■□□□□ 0.55
LIMS3-201ENST00000437679 SNCAIPQ9Y6H5 919 aa18.48■□□□□ 0.55
LIMS3-201ENST00000437679 DDTLA6NHG4 134 aaPredicted RBP18.47■□□□□ 0.55
LIMS3-201ENST00000437679 SPDYE5A6NIY4 337 aa18.47■□□□□ 0.55
LIMS3-201ENST00000437679 ALDH1A1P00352 501 aa18.47■□□□□ 0.55
LIMS3-201ENST00000437679 ATP5JP18859 108 aa18.47■□□□□ 0.55
LIMS3-201ENST00000437679 INPP5BP32019 993 aa18.47■□□□□ 0.55
LIMS3-201ENST00000437679 OTUD7BQ6GQQ9 843 aa18.47■□□□□ 0.55
LIMS3-201ENST00000437679 ADGRA1Q86SQ6 560 aa18.47■□□□□ 0.55
LIMS3-201ENST00000437679 CNKSR2Q8WXI2 1034 aa18.47■□□□□ 0.55
LIMS3-201ENST00000437679 ATRNL1Q5VV63 1379 aa18.46■□□□□ 0.55
LIMS3-201ENST00000437679 LAMB1P07942 1786 aa18.46■□□□□ 0.55
LIMS3-201ENST00000437679 GOLIM4O00461 696 aa18.46■□□□□ 0.55
LIMS3-201ENST00000437679 GTF2A2P52657 109 aa18.46■□□□□ 0.55
LIMS3-201ENST00000437679 IFFO2Q5TF58 517 aa18.46■□□□□ 0.55
LIMS3-201ENST00000437679 IFNL1Q8IU54 200 aa18.46■□□□□ 0.55
LIMS3-201ENST00000437679 CERS3Q8IU89 383 aa18.46■□□□□ 0.55
LIMS3-201ENST00000437679 OSBPL5Q9H0X9 879 aaPredicted RBP18.46■□□□□ 0.55
LIMS3-201ENST00000437679 BOLA2Q9H3K6 86 aa18.46■□□□□ 0.55
LIMS3-201ENST00000437679 TBC1D8O95759 1140 aa18.45■□□□□ 0.54
LIMS3-201ENST00000437679 TGFBRAP1Q8WUH2 860 aa18.45■□□□□ 0.54
LIMS3-201ENST00000437679 COL2A1P02458 1487 aaPredicted RBP18.45■□□□□ 0.54
LIMS3-201ENST00000437679 TESPA1A2RU30 521 aaPredicted RBP18.44■□□□□ 0.54
LIMS3-201ENST00000437679 DYNLL1P63167 89 aaKnown RBP18.44■□□□□ 0.54
LIMS3-201ENST00000437679 MAP3K10Q02779 954 aa18.44■□□□□ 0.54
LIMS3-201ENST00000437679 PPIL2Q13356 520 aa18.44■□□□□ 0.54
LIMS3-201ENST00000437679 AAMPQ13685 434 aa18.44■□□□□ 0.54
LIMS3-201ENST00000437679 NOL9Q5SY16 702 aaKnown RBP18.44■□□□□ 0.54
LIMS3-201ENST00000437679 MIGA1Q8NAN2 632 aa18.44■□□□□ 0.54
LIMS3-201ENST00000437679 GPATCH3Q96I76 525 aa18.44■□□□□ 0.54
LIMS3-201ENST00000437679 MS4A4AQ96JQ5 239 aa18.44■□□□□ 0.54
LIMS3-201ENST00000437679 HAUS7Q99871 368 aa18.44■□□□□ 0.54
LIMS3-201ENST00000437679 PAG1Q9NWQ8 432 aa18.44■□□□□ 0.54
LIMS3-201ENST00000437679 CCL15-CCL14A0A0B4J2E2 113 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 PHF20L1A8MW92 1017 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 IGF2BP3O00425 579 aaKnown RBP eCLIP18.43■□□□□ 0.54
LIMS3-201ENST00000437679 TBC1D12O60347 775 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 PPATQ06203 517 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 CCL15Q16663 113 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 SLC9C2Q5TAH2 1124 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 MAPKAPK5Q8IW41 473 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 CFHR5Q9BXR6 569 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 DHX36Q9H2U1 1008 aaKnown RBP18.43■□□□□ 0.54
LIMS3-201ENST00000437679 PICK1Q9NRD5 415 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 ECHDC1Q9NTX5 307 aa18.43■□□□□ 0.54
LIMS3-201ENST00000437679 CDK5RAP2Q96SN8 1893 aa18.42■□□□□ 0.54
LIMS3-201ENST00000437679 IRF6O14896 467 aa18.42■□□□□ 0.54
LIMS3-201ENST00000437679 CETPP11597 493 aa18.42■□□□□ 0.54
LIMS3-201ENST00000437679 PDE6AP16499 860 aa18.42■□□□□ 0.54
LIMS3-201ENST00000437679 SNAPC2Q13487 334 aa18.42■□□□□ 0.54
LIMS3-201ENST00000437679 SCYL3Q8IZE3 742 aa18.42■□□□□ 0.54
LIMS3-201ENST00000437679 EDC3Q96F86 508 aaKnown RBP18.42■□□□□ 0.54
LIMS3-201ENST00000437679 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.42■□□□□ 0.54
LIMS3-201ENST00000437679 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.42■□□□□ 0.54
LIMS3-201ENST00000437679 PI4KBQ9UBF8 816 aa18.42■□□□□ 0.54
LIMS3-201ENST00000437679 ZBTB47Q9UFB7 747 aaPredicted RBP18.42■□□□□ 0.54
LIMS3-201ENST00000437679 FLT1P17948 1338 aa18.42■□□□□ 0.54
LIMS3-201ENST00000437679 CTNND1O60716 968 aaKnown RBP18.41■□□□□ 0.54
LIMS3-201ENST00000437679 USP5P45974 858 aa18.41■□□□□ 0.54
LIMS3-201ENST00000437679 NOM1Q5C9Z4 860 aaKnown RBP18.41■□□□□ 0.54
LIMS3-201ENST00000437679 BRI3BPQ8WY22 251 aa18.41■□□□□ 0.54
LIMS3-201ENST00000437679 PTPN18Q99952 460 aa18.41■□□□□ 0.54
LIMS3-201ENST00000437679 FOCADQ5VW36 1801 aa18.41■□□□□ 0.54
LIMS3-201ENST00000437679 MAGEB6P1A0A0J9YX57 407 aa18.4■□□□□ 0.54
LIMS3-201ENST00000437679 GPR25O00155 361 aa18.4■□□□□ 0.54
LIMS3-201ENST00000437679 SLURP2P0DP57 97 aa18.4■□□□□ 0.54
LIMS3-201ENST00000437679 HERC5Q9UII4 1024 aaKnown RBP18.4■□□□□ 0.54
LIMS3-201ENST00000437679 SUPT16HQ9Y5B9 1047 aaKnown RBP18.4■□□□□ 0.54
LIMS3-201ENST00000437679 ZNF532Q9HCE3 1301 aa18.4■□□□□ 0.54
LIMS3-201ENST00000437679 FAM196BA6NMK8 535 aa18.39■□□□□ 0.53
LIMS3-201ENST00000437679 HDAC1Q13547 482 aaPredicted RBP18.39■□□□□ 0.53
LIMS3-201ENST00000437679 ZNF296Q8WUU4 475 aaPredicted RBP18.39■□□□□ 0.53
LIMS3-201ENST00000437679 GCC1Q96CN9 775 aa18.39■□□□□ 0.53
LIMS3-201ENST00000437679 TRIM34Q9BYJ4 488 aa18.39■□□□□ 0.53
LIMS3-201ENST00000437679 SAP30BPQ9UHR5 308 aaKnown RBP18.39■□□□□ 0.53
LIMS3-201ENST00000437679 HLA-DOAP06340 250 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms