RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PPP1R7Q15435 360 aa8□□□□□ -1.13
VPS53-204ENST00000437048 GLE1Q53GS7 698 aaKnown RBP8□□□□□ -1.13
VPS53-204ENST00000437048 EP400NLQ6ZTU2 488 aa8□□□□□ -1.13
VPS53-204ENST00000437048 HEATR3Q7Z4Q2 680 aa8□□□□□ -1.13
VPS53-204ENST00000437048 PARD3Q8TEW0 1356 aa8□□□□□ -1.13
VPS53-204ENST00000437048 JRKLQ9Y4A0 524 aa8□□□□□ -1.13
VPS53-204ENST00000437048 COMMD10Q9Y6G5 202 aa8□□□□□ -1.13
VPS53-204ENST00000437048 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8□□□□□ -1.13
VPS53-204ENST00000437048 MINK1Q8N4C8 1332 aaPredicted RBP8□□□□□ -1.13
VPS53-204ENST00000437048 ARHGAP10A1A4S6 786 aa8□□□□□ -1.13
VPS53-204ENST00000437048 SPDYE4A6NLX3 237 aa8□□□□□ -1.13
VPS53-204ENST00000437048 STAG1Q8WVM7 1258 aa8□□□□□ -1.13
VPS53-204ENST00000437048 LRP2BPQ9P2M1 347 aa8□□□□□ -1.13
VPS53-204ENST00000437048 PPP1R9AQ9ULJ8 1098 aa8□□□□□ -1.13
VPS53-204ENST00000437048 RTEL1-TNFRSF6BF6WH68 1400 aa8□□□□□ -1.13
VPS53-204ENST00000437048 PRPF4BQ13523 1007 aaKnown RBP8□□□□□ -1.13
VPS53-204ENST00000437048 PPP4R1Q8TF05 950 aa8□□□□□ -1.13
VPS53-204ENST00000437048 IDEP14735 1019 aa8□□□□□ -1.13
VPS53-204ENST00000437048 SYNCQ9H7C4 482 aa8□□□□□ -1.13
VPS53-204ENST00000437048 LIN9Q5TKA1 542 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 ANGPTL2Q9UKU9 493 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 BIVM-ERCC5R4GMW8 1640 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 RIPPLY1Q0D2K3 151 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 STAMBPL1Q96FJ0 436 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 VGLL3A8MV65 326 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 EMBQ6PCB8 327 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 MFSD6Q6ZSS7 791 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 CKAP2LQ8IYA6 745 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 TRMT1Q9NXH9 659 aaKnown RBP7.99□□□□□ -1.13
VPS53-204ENST00000437048 TNNQ9UQP3 1299 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 CREB3O43889 395 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 ANKRD44Q8N8A2 993 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 ZNF830Q96NB3 372 aaPredicted RBP7.99□□□□□ -1.13
VPS53-204ENST00000437048 GOLGA8AA7E2F4 631 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 MID2Q9UJV3 735 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 MAN1A2O60476 641 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 ZFXP17010 805 aaPredicted RBP7.99□□□□□ -1.13
VPS53-204ENST00000437048 ICE2Q659A1 982 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 PRPF40BQ6NWY9 871 aaKnown RBP7.99□□□□□ -1.13
VPS53-204ENST00000437048 CATSPER1Q8NEC5 780 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 ORC3Q9UBD5 711 aaPredicted RBP7.99□□□□□ -1.13
VPS53-204ENST00000437048 HOXB7P09629 217 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 RBM6P78332 1123 aaKnown RBP7.99□□□□□ -1.13
VPS53-204ENST00000437048 TEDDM1Q5T9Z0 273 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 YY1AP1Q9H869 796 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 IFT140Q96RY7 1462 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 PFDN6O15212 129 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 SAR1BQ9Y6B6 198 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 FAM135BQ49AJ0 1406 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 PAWRQ96IZ0 340 aaKnown RBP7.99□□□□□ -1.13
VPS53-204ENST00000437048 ZBTB43O43298 467 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 MUM1L1Q5H9M0 696 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 SAAL1Q96ER3 474 aa7.99□□□□□ -1.13
VPS53-204ENST00000437048 NLRP7Q8WX94 980 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 PPP1R12AO14974 1030 aaPredicted RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 NBPF14Q5TI25 921 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 TCP11Q8WWU5 503 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 SSH1Q8WYL5 1049 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 CLSTN2Q9H4D0 955 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 FRMD4BQ9Y2L6 1034 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 PSMC4P43686 418 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 YWHAEP62258 255 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 CFAP73A6NFT4 308 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 KRT3P12035 628 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 ETF1P62495 437 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 CAPS2Q9BXY5 557 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 NOC2LQ9Y3T9 749 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 SHANK2Q9UPX8 1470 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 RAD21O60216 631 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 SLC8A3P57103 927 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 TDRD9Q8NDG6 1382 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 FRMD3A2A2Y4 597 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 SECISBP2LQ93073 1101 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 SERPINI1Q99574 410 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 KPNA2P52292 529 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 CRACR2BQ8N4Y2 399 aaPredicted RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 CCDC97Q96F63 343 aaPredicted RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 DACT1Q9NYF0 836 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 MIS18AQ9NYP9 233 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 PAIP2BQ9ULR5 123 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 IFIT5Q13325 482 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 HAUS3Q68CZ6 603 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 ANKRD2Q9GZV1 360 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 FAM8A1Q9UBU6 413 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 CCDC61Q9Y6R9 512 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 RASGRF2O14827 1237 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 N4BP1O75113 896 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 KDM5AP29375 1690 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 TCERG1LQ5VWI1 586 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 ST13P4Q8IZP2 240 aaPredicted RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 IFIT3O14879 490 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 CUTAO60888 179 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 CUL1Q13616 776 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 SYCP3Q8IZU3 236 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 CACYBPQ9HB71 228 aaKnown RBP7.98□□□□□ -1.13
VPS53-204ENST00000437048 C6orf50Q9HD87 102 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 FAM169AQ9Y6X4 670 aa7.98□□□□□ -1.13
VPS53-204ENST00000437048 E7ENQ6 273 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 BCRP11274 1271 aa7.97□□□□□ -1.13
VPS53-204ENST00000437048 RRAGBQ5VZM2 374 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms