RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ERC2O15083 957 aa22.61■■□□□ 1.21
SHH-203ENST00000435425 SLC10A3P09131 477 aa22.61■■□□□ 1.21
SHH-203ENST00000435425 MKRN3Q13064 507 aaKnown RBP22.61■■□□□ 1.21
SHH-203ENST00000435425 MAP3K11Q16584 847 aa22.61■■□□□ 1.21
SHH-203ENST00000435425 SLFNL1Q499Z3 407 aa22.61■■□□□ 1.21
SHH-203ENST00000435425 TGFBRAP1Q8WUH2 860 aa22.61■■□□□ 1.21
SHH-203ENST00000435425 SLC10A4Q96EP9 437 aa22.61■■□□□ 1.21
SHH-203ENST00000435425 ZIC5Q96T25 663 aa22.61■■□□□ 1.21
SHH-203ENST00000435425 DDTLA6NHG4 134 aaPredicted RBP22.6■■□□□ 1.21
SHH-203ENST00000435425 NOGQ13253 232 aa22.6■■□□□ 1.21
SHH-203ENST00000435425 DCAF15Q66K64 600 aa22.6■■□□□ 1.21
SHH-203ENST00000435425 SH3BP5LQ7L8J4 393 aa22.6■■□□□ 1.21
SHH-203ENST00000435425 CSRNP1Q96S65 589 aa22.6■■□□□ 1.21
SHH-203ENST00000435425 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.6■■□□□ 1.21
SHH-203ENST00000435425 FOCADQ5VW36 1801 aa22.59■■□□□ 1.21
SHH-203ENST00000435425 MAGEB6P1A0A0J9YX57 407 aa22.59■■□□□ 1.21
SHH-203ENST00000435425 MAP2K2P36507 400 aa22.59■■□□□ 1.21
SHH-203ENST00000435425 CHD1LQ86WJ1 897 aa22.59■■□□□ 1.21
SHH-203ENST00000435425 MAPKAPK5Q8IW41 473 aa22.59■■□□□ 1.21
SHH-203ENST00000435425 ANKRD13AQ8IZ07 590 aa22.59■■□□□ 1.21
SHH-203ENST00000435425 PI4K2BQ8TCG2 481 aa22.59■■□□□ 1.21
SHH-203ENST00000435425 THSD7BQ9C0I4 1608 aa22.58■■□□□ 1.21
SHH-203ENST00000435425 GLRX3O76003 335 aaKnown RBP22.58■■□□□ 1.21
SHH-203ENST00000435425 CHGBP05060 677 aa22.58■■□□□ 1.21
SHH-203ENST00000435425 HSPA1AP0DMV8 641 aaKnown RBP22.58■■□□□ 1.21
SHH-203ENST00000435425 HSPA1BP0DMV9 641 aaKnown RBP22.58■■□□□ 1.21
SHH-203ENST00000435425 ADD2P35612 726 aa22.58■■□□□ 1.21
SHH-203ENST00000435425 MAP3K9P80192 1104 aa22.58■■□□□ 1.21
SHH-203ENST00000435425 KIF23Q02241 960 aaPredicted RBP22.58■■□□□ 1.21
SHH-203ENST00000435425 ZNF341Q9BYN7 854 aa22.58■■□□□ 1.21
SHH-203ENST00000435425 OSBPL5Q9H0X9 879 aaPredicted RBP22.58■■□□□ 1.21
SHH-203ENST00000435425 ELP3Q9H9T3 547 aa22.58■■□□□ 1.21
SHH-203ENST00000435425 SALL3Q9BXA9 1300 aa22.57■■□□□ 1.2
SHH-203ENST00000435425 TCRBV5S4A2TA0A5A2 114 aa22.57■■□□□ 1.2
SHH-203ENST00000435425 SLURP2P0DP57 97 aa22.57■■□□□ 1.2
SHH-203ENST00000435425 USP5P45974 858 aa22.57■■□□□ 1.2
SHH-203ENST00000435425 NUCB1Q02818 461 aa22.57■■□□□ 1.2
SHH-203ENST00000435425 TMED8Q6PL24 325 aaPredicted RBP22.57■■□□□ 1.2
SHH-203ENST00000435425 WRNIP1Q96S55 665 aa22.57■■□□□ 1.2
SHH-203ENST00000435425 NPM3O75607 178 aaKnown RBP22.56■■□□□ 1.2
SHH-203ENST00000435425 MAP2K1Q02750 393 aaPredicted RBP22.56■■□□□ 1.2
SHH-203ENST00000435425 ZSCAN25Q6NSZ9 544 aa22.56■■□□□ 1.2
SHH-203ENST00000435425 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.56■■□□□ 1.2
SHH-203ENST00000435425 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.56■■□□□ 1.2
SHH-203ENST00000435425 SAP30BPQ9UHR5 308 aaKnown RBP22.56■■□□□ 1.2
SHH-203ENST00000435425 CSADQ9Y600 493 aa22.56■■□□□ 1.2
SHH-203ENST00000435425 MYH1P12882 1939 aa22.56■■□□□ 1.2
SHH-203ENST00000435425 PDE1AP54750 535 aa22.55■■□□□ 1.2
SHH-203ENST00000435425 VGLL4Q14135 290 aa22.55■■□□□ 1.2
SHH-203ENST00000435425 KBTBD3Q8NAB2 608 aa22.55■■□□□ 1.2
SHH-203ENST00000435425 ZKSCAN4Q969J2 545 aaPredicted RBP22.55■■□□□ 1.2
SHH-203ENST00000435425 AIDAQ96BJ3 306 aa22.55■■□□□ 1.2
SHH-203ENST00000435425 RIOK1Q9BRS2 568 aaKnown RBP22.55■■□□□ 1.2
SHH-203ENST00000435425 FLT1P17948 1338 aa22.55■■□□□ 1.2
SHH-203ENST00000435425 INPP5BP32019 993 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 SLC4A8Q2Y0W8 1093 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 SPRYD7Q5W111 196 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 CERS3Q8IU89 383 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 WNK4Q96J92 1243 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 BEGAINQ9BUH8 593 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 ARMT1Q9H993 441 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 WBP1LQ9NX94 342 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 STAP2Q9UGK3 403 aa22.54■■□□□ 1.2
SHH-203ENST00000435425 UNCXA6NJT0 531 aa22.53■■□□□ 1.2
SHH-203ENST00000435425 FAM196BA6NMK8 535 aa22.53■■□□□ 1.2
SHH-203ENST00000435425 UBE3CQ15386 1083 aa22.53■■□□□ 1.2
SHH-203ENST00000435425 LCORLQ8N3X6 602 aa22.53■■□□□ 1.2
SHH-203ENST00000435425 PALD1Q9ULE6 856 aa22.53■■□□□ 1.2
SHH-203ENST00000435425 ATRNL1Q5VV63 1379 aa22.52■■□□□ 1.2
SHH-203ENST00000435425 MBD4O95243 580 aa22.52■■□□□ 1.2
SHH-203ENST00000435425 CNKSR2Q8WXI2 1034 aa22.52■■□□□ 1.2
SHH-203ENST00000435425 OPTNQ96CV9 577 aa22.52■■□□□ 1.2
SHH-203ENST00000435425 FSD1Q9BTV5 496 aa22.52■■□□□ 1.2
SHH-203ENST00000435425 CRNKL1Q9BZJ0 848 aaKnown RBP22.52■■□□□ 1.2
SHH-203ENST00000435425 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.52■■□□□ 1.23e-7■■□□□ 13.9
SHH-203ENST00000435425 NAV1Q8NEY1 1877 aa22.51■■□□□ 1.19
SHH-203ENST00000435425 CENPBP07199 599 aaPredicted RBP22.51■■□□□ 1.19
SHH-203ENST00000435425 DHX36Q9H2U1 1008 aaKnown RBP22.51■■□□□ 1.19
SHH-203ENST00000435425 SNCAIPQ9Y6H5 919 aa22.51■■□□□ 1.19
SHH-203ENST00000435425 COL2A1P02458 1487 aaPredicted RBP22.51■■□□□ 1.19
SHH-203ENST00000435425 FOXN1O15353 648 aa22.5■■□□□ 1.19
SHH-203ENST00000435425 RNF113AO15541 343 aaKnown RBP22.5■■□□□ 1.19
SHH-203ENST00000435425 GJA5P36382 358 aa22.5■■□□□ 1.19
SHH-203ENST00000435425 PLEKHM2Q8IWE5 1019 aa22.5■■□□□ 1.19
SHH-203ENST00000435425 SDR42E1Q8WUS8 393 aa22.5■■□□□ 1.19
SHH-203ENST00000435425 OTUD5Q96G74 571 aa22.5■■□□□ 1.19
SHH-203ENST00000435425 PUS7LQ9H0K6 701 aaKnown RBP22.5■■□□□ 1.19
SHH-203ENST00000435425 ZNF112Q9UJU3 913 aa22.5■■□□□ 1.19
SHH-203ENST00000435425 SIPA1L1O43166 1804 aa22.5■■□□□ 1.19
SHH-203ENST00000435425 PRKAB2O43741 272 aa22.49■■□□□ 1.19
SHH-203ENST00000435425 CRACR2BQ8N4Y2 399 aaPredicted RBP22.49■■□□□ 1.19
SHH-203ENST00000435425 TRIM34Q9BYJ4 488 aa22.49■■□□□ 1.19
SHH-203ENST00000435425 PI4KBQ9UBF8 816 aa22.49■■□□□ 1.19
SHH-203ENST00000435425 TSKSQ9UJT2 592 aa22.49■■□□□ 1.19
SHH-203ENST00000435425 PHF20L1A8MW92 1017 aa22.48■■□□□ 1.19
SHH-203ENST00000435425 TRIM6-TRIM34B2RNG4 842 aa22.48■■□□□ 1.19
SHH-203ENST00000435425 HLA-DOAP06340 250 aa22.48■■□□□ 1.19
SHH-203ENST00000435425 NEFLP07196 543 aa22.48■■□□□ 1.19
SHH-203ENST00000435425 ZFYP08048 801 aaPredicted RBP22.48■■□□□ 1.19
SHH-203ENST00000435425 ZBTB48P10074 688 aaPredicted RBP22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms