RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 V9GYY5 206 aaPredicted RBP9.73□□□□□ -0.85
CD44-208ENST00000428726 GOLGA8HP0CJ92 632 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 DPCR1Q3MIW9 517 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 CCDC144BQ3MJ40 725 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 ARHGEF1Q92888 912 aaKnown RBP9.72□□□□□ -0.85
CD44-208ENST00000428726 KCNF1Q9H3M0 494 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 VAT1LQ9HCJ6 419 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 CCDC39Q9UFE4 941 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 ANGEL1Q9UNK9 670 aaKnown RBP9.72□□□□□ -0.85
CD44-208ENST00000428726 MINPP1Q9UNW1 487 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 COL4A1P02462 1669 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 PLEKHA8P1O95397 391 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 USP17L8P0C7I0 530 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 IARSP41252 1262 aaKnown RBP9.72□□□□□ -0.85
CD44-208ENST00000428726 KIAA2012Q0VF49 1180 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 PNOCQ13519 176 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 CLEC10AQ8IUN9 316 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 RASGRP4Q8TDF6 673 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 ZNF384Q8TF68 577 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 MYO5AQ9Y4I1 1855 aaKnown RBP9.72□□□□□ -0.85
CD44-208ENST00000428726 ABCC12Q96J65 1359 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 TULP1O00294 542 aaPredicted RBP9.72□□□□□ -0.85
CD44-208ENST00000428726 WNT7AO00755 349 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 TRIM37O94972 964 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 UVSSAQ2YD98 709 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 FAM177A1Q8N128 213 aaPredicted RBP9.72□□□□□ -0.85
CD44-208ENST00000428726 CNKSR2Q8WXI2 1034 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 BCL2L12Q9HB09 334 aa9.72□□□□□ -0.85
CD44-208ENST00000428726 GOLGA6L19H0YKK7 550 aa9.71□□□□□ -0.85
CD44-208ENST00000428726 SMC2O95347 1197 aa9.71□□□□□ -0.85
CD44-208ENST00000428726 EARS2Q5JPH6 523 aaKnown RBP9.71□□□□□ -0.85
CD44-208ENST00000428726 KLHL10Q6JEL2 608 aa9.71□□□□□ -0.85
CD44-208ENST00000428726 FUCA2Q9BTY2 467 aa9.71□□□□□ -0.85
CD44-208ENST00000428726 CABP5Q9NP86 173 aa9.71□□□□□ -0.85
CD44-208ENST00000428726 SCAF8Q9UPN6 1271 aaKnown RBP9.71□□□□□ -0.85
CD44-208ENST00000428726 V9GY48 417 aaPredicted RBP9.71□□□□□ -0.85
CD44-208ENST00000428726 ELP1O95163 1332 aa9.71□□□□□ -0.86
CD44-208ENST00000428726 CDHR2Q9BYE9 1310 aa9.71□□□□□ -0.86
CD44-208ENST00000428726 TCRBV5S4A2TA0A5A2 114 aa9.71□□□□□ -0.86
CD44-208ENST00000428726 ERCC3P19447 782 aa9.71□□□□□ -0.86
CD44-208ENST00000428726 RFC4P35249 363 aa9.71□□□□□ -0.86
CD44-208ENST00000428726 NAA16Q6N069 864 aaPredicted RBP9.71□□□□□ -0.86
CD44-208ENST00000428726 TRMT44Q8IYL2 757 aaKnown RBP9.71□□□□□ -0.86
CD44-208ENST00000428726 SMARCC2Q8TAQ2 1214 aa9.71□□□□□ -0.86
CD44-208ENST00000428726 FAM84BQ96KN1 310 aaPredicted RBP9.71□□□□□ -0.86
CD44-208ENST00000428726 CFAP45Q9UL16 551 aa9.71□□□□□ -0.86
CD44-208ENST00000428726 ITGB4P16144 1822 aa9.71□□□□□ -0.86
CD44-208ENST00000428726 SLIT2O94813 1529 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 MAGEB6P1A0A0J9YX57 407 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 SPTLC2O15270 562 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 ZFYP08048 801 aaPredicted RBP9.7□□□□□ -0.86
CD44-208ENST00000428726 ATP1A3P13637 1013 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 AFMP43652 599 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 MYSM1Q5VVJ2 828 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 FBXO18Q8NFZ0 1043 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 LLPHQ9BRT6 129 aaKnown RBP9.7□□□□□ -0.86
CD44-208ENST00000428726 UBAC1Q9BSL1 405 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 MAPK8IP1Q9UQF2 711 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 FAM170AA1A519 330 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 PATL2C9JE40 543 aaKnown RBP9.7□□□□□ -0.86
CD44-208ENST00000428726 RPS8P62241 208 aaKnown RBP9.7□□□□□ -0.86
CD44-208ENST00000428726 SNW1Q13573 536 aaKnown RBP9.7□□□□□ -0.86
CD44-208ENST00000428726 NOLC1Q14978 699 aaKnown RBP eCLIP9.7□□□□□ -0.86
CD44-208ENST00000428726 WTAPQ15007 396 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 SMYD4Q8IYR2 804 aaPredicted RBP9.7□□□□□ -0.86
CD44-208ENST00000428726 IGDCC4Q8TDY8 1250 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 NLRP3Q96P20 1036 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 LY9Q9HBG7 655 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 LRRC4BQ9NT99 713 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 FAM217BQ9NTX9 383 aaPredicted RBP9.7□□□□□ -0.86
CD44-208ENST00000428726 MCM9Q9NXL9 1143 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 MROH7-TTC4A0A0A0MT08 1334 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 DISP2A7MBM2 1401 aa9.7□□□□□ -0.86
CD44-208ENST00000428726 COL14A1Q05707 1796 aaKnown RBP9.69□□□□□ -0.86
CD44-208ENST00000428726 SH2B2O14492 632 aaPredicted RBP9.69□□□□□ -0.86
CD44-208ENST00000428726 FGFR2P21802 821 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 STX17P56962 302 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 PICALMQ13492 652 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 MAPKAPK5Q8IW41 473 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 FAM200AQ8TCP9 573 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 GPKOWQ92917 476 aaPredicted RBP eCLIP9.69□□□□□ -0.86
CD44-208ENST00000428726 CLSTN2Q9H4D0 955 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 PCDHB6Q9Y5E3 794 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 USP17L3A6NCW0 530 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 USP17L4A6NCW7 530 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 USP27XA6NNY8 438 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 ATP2B2Q01814 1243 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 MECOMQ03112 1051 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 ZNF174Q15697 407 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 CAVIN4Q5BKX8 364 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 AKNAD1Q5T1N1 836 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 USP17L1Q7RTZ2 530 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 HOMER1Q86YM7 354 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 CLIP2Q9UDT6 1046 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 STX8Q9UNK0 236 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 LRP6O75581 1613 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 SPATA31A5Q5VU36 1347 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 SPATA31A7Q8IWB4 1347 aa9.69□□□□□ -0.86
CD44-208ENST00000428726 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.69□□□□□ -0.86
CD44-208ENST00000428726 ZNF500O60304 480 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms