RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 GOLGA8BA8MQT2 603 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 G3V3G9 751 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 TGFB2P61812 414 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 PPARAQ07869 468 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 PPP2R5BQ15173 497 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 TMEM67Q5HYA8 995 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 DCAF8Q5TAQ9 597 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 CC2D2BQ6DHV5 1058 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 NFXL1Q6ZNB6 911 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 TBC1D10CQ8IV04 446 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 TBC1D16Q8TBP0 767 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 CNKSR1Q969H4 720 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 UBAC1Q9BSL1 405 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 LRRC2Q9BYS8 371 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 ZC3H12CQ9C0D7 883 aaKnown RBP11.08□□□□□ -0.64
HMGB4-201ENST00000425537 EPB41L4AQ9HCS5 686 aaPredicted RBP11.08□□□□□ -0.64
HMGB4-201ENST00000425537 CD209Q9NNX6 404 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 TOMM22Q9NS69 142 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 ARPP21Q9UBL0 812 aaPredicted RBP11.08□□□□□ -0.64
HMGB4-201ENST00000425537 MTMR6Q9Y217 621 aa11.08□□□□□ -0.64
HMGB4-201ENST00000425537 CCDC196A0A1B0GTZ2 297 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 B4E1Z4 1266 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 SH2B2O14492 632 aaPredicted RBP11.07□□□□□ -0.64
HMGB4-201ENST00000425537 IFIT3O14879 490 aaKnown RBP11.07□□□□□ -0.64
HMGB4-201ENST00000425537 PRPF40AO75400 957 aaKnown RBP11.07□□□□□ -0.64
HMGB4-201ENST00000425537 KLRK1P26718 216 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 KRT85P78386 507 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 RASSF7Q02833 373 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 PDE4BQ07343 736 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 ST3GAL1Q11201 340 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 SCRN1Q12765 414 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 SBK1Q52WX2 424 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 CCDC178Q5BJE1 867 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 FOXD4L5Q5VV16 416 aaPredicted RBP11.07□□□□□ -0.64
HMGB4-201ENST00000425537 ATL3Q6DD88 541 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 DPP8Q6V1X1 898 aaPredicted RBP11.07□□□□□ -0.64
HMGB4-201ENST00000425537 SGMS1Q86VZ5 419 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 TMEM87AQ8NBN3 555 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 FOXD4L4Q8WXT5 416 aaPredicted RBP11.07□□□□□ -0.64
HMGB4-201ENST00000425537 SCAND2PQ9GZW5 306 aaPredicted RBP11.07□□□□□ -0.64
HMGB4-201ENST00000425537 ZNF287Q9HBT7 754 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 LMBRD1Q9NUN5 540 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 PIM2Q9P1W9 311 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 FAM205AQ6ZU69 1335 aa11.07□□□□□ -0.64
HMGB4-201ENST00000425537 PTPDC1A2A3K4 754 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 MINDY4BA8MYZ0 360 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 ZBTB43O43298 467 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 PRKAB2O43741 272 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 C21orf2O43822 256 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 KDM4AO75164 1064 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 PRDX5P30044 214 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 ANTXR2P58335 489 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 PPP4CP60510 307 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 CTDSPL2Q05D32 466 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 WTAPQ15007 396 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 DALRD3Q5D0E6 543 aaKnown RBP11.06□□□□□ -0.64
HMGB4-201ENST00000425537 TXNRD3Q86VQ6 643 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 IQCA1Q86XH1 822 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 NSUN7Q8NE18 718 aaKnown RBP11.06□□□□□ -0.64
HMGB4-201ENST00000425537 SUPT20HQ8NEM7 779 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 WASF1Q92558 559 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 NBPF3Q9H094 633 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 SLC12A7Q9Y666 1083 aa11.06□□□□□ -0.64
HMGB4-201ENST00000425537 GOLGA6L3A6NEY3 463 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 WTIPA6NIX2 430 aaPredicted RBP11.05□□□□□ -0.64
HMGB4-201ENST00000425537 CALM1P0DP23 149 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 CALM2P0DP24 149 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 CALM3P0DP25 149 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 USP5P45974 858 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 METAP2P50579 478 aaKnown RBP eCLIP11.05□□□□□ -0.64
HMGB4-201ENST00000425537 DYNLL1P63167 89 aaKnown RBP11.05□□□□□ -0.64
HMGB4-201ENST00000425537 CCT2P78371 535 aaKnown RBP11.05□□□□□ -0.64
HMGB4-201ENST00000425537 CHST3Q7LGC8 479 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 ADGRA1Q86SQ6 560 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 TTLL6Q8N841 843 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 FAM163AQ96GL9 167 aaPredicted RBP11.05□□□□□ -0.64
HMGB4-201ENST00000425537 AATFQ9NY61 560 aaKnown RBP eCLIP11.05□□□□□ -0.64
HMGB4-201ENST00000425537 CFAP45Q9UL16 551 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 LAMB1P07942 1786 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 MROH7-TTC4A0A0A0MT08 1334 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 NEDD4P46934 1319 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 ARFGEF1Q9Y6D6 1849 aa11.05□□□□□ -0.64
HMGB4-201ENST00000425537 LTBP1Q14766 1721 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 SRCAPQ6ZRS2 3230 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 GOLGA8AA7E2F4 631 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 ORC4O43929 436 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 LETM1O95202 739 aaPredicted RBP11.04□□□□□ -0.64
HMGB4-201ENST00000425537 UBE2HP62256 183 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 TRIM29Q14134 588 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 RRP12Q5JTH9 1297 aaKnown RBP11.04□□□□□ -0.64
HMGB4-201ENST00000425537 APOA5Q6Q788 366 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 ARHGAP27Q6ZUM4 889 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 CYB5R4Q7L1T6 521 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 IGDCC4Q8TDY8 1250 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 SDR42E1Q8WUS8 393 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 ZNF396Q96N95 335 aaPredicted RBP11.04□□□□□ -0.64
HMGB4-201ENST00000425537 ZSWIM5Q9P217 1185 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 POLLQ9UGP5 575 aa11.04□□□□□ -0.64
HMGB4-201ENST00000425537 NID2Q14112 1375 aa11.03□□□□□ -0.64
HMGB4-201ENST00000425537 GOLGA6L4A6NEF3 574 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms