RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SDR42E1Q8WUS8 393 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 MAP4K1Q92918 833 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 IDI2Q9BXS1 227 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 RNF41Q9H4P4 317 aaPredicted RBP12.01□□□□□ -0.49
CD44-207ENST00000425428 WDR90Q96KV7 1748 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 FOCADQ5VW36 1801 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 BAZ2AQ9UIF9 1905 aaKnown RBP12.01□□□□□ -0.49
CD44-207ENST00000425428 ZMYM6O95789 1325 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 CDK5RAP2Q96SN8 1893 aa12.01□□□□□ -0.49
CD44-207ENST00000425428 TCP10L2B9ZVM9 353 aa12□□□□□ -0.49
CD44-207ENST00000425428 CHGBP05060 677 aa12□□□□□ -0.49
CD44-207ENST00000425428 PDE4BQ07343 736 aa12□□□□□ -0.49
CD44-207ENST00000425428 NBPF9Q3BBW0 867 aa12□□□□□ -0.49
CD44-207ENST00000425428 FAM83AQ86UY5 434 aa12□□□□□ -0.49
CD44-207ENST00000425428 CRACR2BQ8N4Y2 399 aaPredicted RBP12□□□□□ -0.49
CD44-207ENST00000425428 TAOK2Q9UL54 1235 aa12□□□□□ -0.49
CD44-207ENST00000425428 RBM8AQ9Y5S9 174 aaKnown RBP12□□□□□ -0.49
CD44-207ENST00000425428 ADAMTSL1Q8N6G6 1762 aa12□□□□□ -0.49
CD44-207ENST00000425428 GSG1L2A8MUP6 293 aa12□□□□□ -0.49
CD44-207ENST00000425428 PRKAB2O43741 272 aa12□□□□□ -0.49
CD44-207ENST00000425428 FGAP02671 866 aa12□□□□□ -0.49
CD44-207ENST00000425428 PCP11498 1178 aaKnown RBP12□□□□□ -0.49
CD44-207ENST00000425428 NF2P35240 595 aa12□□□□□ -0.49
CD44-207ENST00000425428 RHBDL3P58872 404 aa12□□□□□ -0.49
CD44-207ENST00000425428 TCP10Q12799 353 aa12□□□□□ -0.49
CD44-207ENST00000425428 ZNF526Q8TF50 670 aaPredicted RBP12□□□□□ -0.49
CD44-207ENST00000425428 C22orf23Q9BZE7 217 aa12□□□□□ -0.49
CD44-207ENST00000425428 LSG1Q9H089 658 aaKnown RBP12□□□□□ -0.49
CD44-207ENST00000425428 RRAGCQ9HB90 399 aa12□□□□□ -0.49
CD44-207ENST00000425428 GPBP1L1Q9HC44 474 aaPredicted RBP12□□□□□ -0.49
CD44-207ENST00000425428 DCP1AQ9NPI6 582 aaPredicted RBP12□□□□□ -0.49
CD44-207ENST00000425428 PPP2R3BQ9Y5P8 575 aa12□□□□□ -0.49
CD44-207ENST00000425428 FLT1P17948 1338 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 PITPNM2Q9BZ72 1349 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 PSMA5P28066 241 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 NT5C2P49902 561 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 VPS53Q5VIR6 699 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 ANGEL2Q5VTE6 544 aaKnown RBP11.99□□□□□ -0.49
CD44-207ENST00000425428 RALYLQ86SE5 291 aaKnown RBP11.99□□□□□ -0.49
CD44-207ENST00000425428 FAM151AQ8WW52 585 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 USP26Q9BXU7 913 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 OSBPL5Q9H0X9 879 aaPredicted RBP11.99□□□□□ -0.49
CD44-207ENST00000425428 TAF1DQ9H5J8 278 aaPredicted RBP11.99□□□□□ -0.49
CD44-207ENST00000425428 CNNM2Q9H8M5 875 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 MKNK2Q9HBH9 465 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 TOMM22Q9NS69 142 aa11.99□□□□□ -0.49
CD44-207ENST00000425428 SAP30BPQ9UHR5 308 aaKnown RBP11.99□□□□□ -0.49
CD44-207ENST00000425428 MYH8P13535 1937 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 POLR2AP24928 1970 aaKnown RBP11.98□□□□□ -0.49
CD44-207ENST00000425428 SHTN1A0MZ66 631 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 USP17L12C9JPN9 530 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 USP17L21D6R901 530 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 PTH1RQ03431 593 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 SUPT20HL1Q3ZLR7 823 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 SBK1Q52WX2 424 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 MFSD6Q6ZSS7 791 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 TRPM4Q8TD43 1214 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 GGA3Q9NZ52 723 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 PI4KBQ9UBF8 816 aa11.98□□□□□ -0.49
CD44-207ENST00000425428 WDHD1O75717 1129 aaPredicted RBP11.97□□□□□ -0.49
CD44-207ENST00000425428 HMGB1P09429 215 aaKnown RBP11.97□□□□□ -0.49
CD44-207ENST00000425428 CACNB3P54284 484 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 ANAPC15P60006 121 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 PPARAQ07869 468 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 DCAF15Q66K64 600 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 CREB3L3Q68CJ9 461 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 FOXP4Q8IVH2 680 aaPredicted RBP11.97□□□□□ -0.49
CD44-207ENST00000425428 IL27Q8NEV9 243 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 ZBED3Q96IU2 234 aaPredicted RBP11.97□□□□□ -0.49
CD44-207ENST00000425428 CSRNP1Q96S65 589 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 SWAP70Q9UH65 585 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 LAMB1P07942 1786 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 HSPA4P34932 840 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 CTR9Q6PD62 1173 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 ZNF444Q8N0Y2 327 aaPredicted RBP11.97□□□□□ -0.49
CD44-207ENST00000425428 KRT23Q9C075 422 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 DEFB129Q9H1M3 183 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 PALD1Q9ULE6 856 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 PCDHAC2Q9Y5I4 1007 aa11.97□□□□□ -0.49
CD44-207ENST00000425428 LAMA4Q16363 1823 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 HAND2P61296 217 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 FGD1P98174 961 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 RASA3Q14644 834 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 C12orf60Q5U649 245 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 CDC37L1Q7L3B6 337 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 KRT26Q7Z3Y9 468 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 LDHDQ86WU2 507 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 IL25Q9H293 177 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 HERC5Q9UII4 1024 aaKnown RBP11.96□□□□□ -0.49
CD44-207ENST00000425428 SERPINB13Q9UIV8 391 aa11.96□□□□□ -0.49
CD44-207ENST00000425428 UTRNP46939 3433 aa11.96□□□□□ -0.5
CD44-207ENST00000425428 SLC27A2O14975 620 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 YY1P25490 414 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 NFIAQ12857 509 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 SART3Q15020 963 aaKnown RBP11.95□□□□□ -0.5
CD44-207ENST00000425428 NECTIN1Q15223 517 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 PPP4R3BQ5MIZ7 849 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 AKNAD1Q5T1N1 836 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 NCOA7Q8NI08 942 aa11.95□□□□□ -0.5
CD44-207ENST00000425428 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms