RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 TRAF5O00463 557 aa14.53□□□□□ -0.08
LINC00539-202ENST00000423575 FOXP2O15409 715 aa14.53□□□□□ -0.08
LINC00539-202ENST00000423575 ENTPD3O75355 529 aa14.53□□□□□ -0.08
LINC00539-202ENST00000423575 NPM3O75607 178 aaKnown RBP14.53□□□□□ -0.08
LINC00539-202ENST00000423575 USP5P45974 858 aa14.53□□□□□ -0.08
LINC00539-202ENST00000423575 FMR1Q06787 632 aaKnown RBP eCLIP14.53□□□□□ -0.08
LINC00539-202ENST00000423575 CDC37L1Q7L3B6 337 aa14.53□□□□□ -0.08
LINC00539-202ENST00000423575 FAM83AQ86UY5 434 aa14.53□□□□□ -0.08
LINC00539-202ENST00000423575 OSBPL5Q9H0X9 879 aaPredicted RBP14.53□□□□□ -0.08
LINC00539-202ENST00000423575 MKRN1Q9UHC7 482 aaKnown RBP14.53□□□□□ -0.08
LINC00539-202ENST00000423575 TNNI2P48788 182 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 VPS53Q5VIR6 699 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 PRAMEF18Q5VWM3 479 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 SH3BP5LQ7L8J4 393 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 SMC1BQ8NDV3 1235 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 FAM151AQ8WW52 585 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 CDCA5Q96FF9 252 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 TEPSINQ96N21 525 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 EPB41L4AQ9HCS5 686 aaPredicted RBP14.52□□□□□ -0.09
LINC00539-202ENST00000423575 DCP1AQ9NPI6 582 aaPredicted RBP14.52□□□□□ -0.09
LINC00539-202ENST00000423575 SAP30BPQ9UHR5 308 aaKnown RBP14.52□□□□□ -0.09
LINC00539-202ENST00000423575 PPP2R3BQ9Y5P8 575 aa14.52□□□□□ -0.09
LINC00539-202ENST00000423575 ATRNL1Q5VV63 1379 aa14.51□□□□□ -0.09
LINC00539-202ENST00000423575 DDTLA6NHG4 134 aaPredicted RBP14.51□□□□□ -0.09
LINC00539-202ENST00000423575 GSG1L2A8MUP6 293 aa14.51□□□□□ -0.09
LINC00539-202ENST00000423575 SGSM2O43147 1006 aa14.51□□□□□ -0.09
LINC00539-202ENST00000423575 ITGBL1O95965 494 aaPredicted RBP14.51□□□□□ -0.09
LINC00539-202ENST00000423575 GNAT2P19087 354 aa14.51□□□□□ -0.09
LINC00539-202ENST00000423575 RUFY2Q8WXA3 655 aa14.51□□□□□ -0.09
LINC00539-202ENST00000423575 ESYT1Q9BSJ8 1104 aa14.51□□□□□ -0.09
LINC00539-202ENST00000423575 ATP8A2Q9NTI2 1148 aa14.51□□□□□ -0.09
LINC00539-202ENST00000423575 SSC5DA1L4H1 1573 aa14.51□□□□□ -0.09
LINC00539-202ENST00000423575 COL2A1P02458 1487 aaPredicted RBP14.5□□□□□ -0.09
LINC00539-202ENST00000423575 DDX60LQ5H9U9 1706 aaKnown RBP14.5□□□□□ -0.09
LINC00539-202ENST00000423575 NBPF12Q5TAG4 269 aaPredicted RBP14.5□□□□□ -0.09
LINC00539-202ENST00000423575 PASKQ96RG2 1323 aa14.49□□□□□ -0.09
LINC00539-202ENST00000423575 PATL2C9JE40 543 aaKnown RBP14.49□□□□□ -0.09
LINC00539-202ENST00000423575 CYP2D6P10635 497 aa14.49□□□□□ -0.09
LINC00539-202ENST00000423575 MFAP1P55081 439 aaKnown RBP14.49□□□□□ -0.09
LINC00539-202ENST00000423575 EVX2Q03828 476 aa14.49□□□□□ -0.09
LINC00539-202ENST00000423575 FSTL1Q12841 308 aa14.49□□□□□ -0.09
LINC00539-202ENST00000423575 SLC4A8Q2Y0W8 1093 aa14.49□□□□□ -0.09
LINC00539-202ENST00000423575 CASC1Q6TDU7 716 aa14.49□□□□□ -0.09
LINC00539-202ENST00000423575 ZSCAN29Q8IWY8 852 aaPredicted RBP14.49□□□□□ -0.09
LINC00539-202ENST00000423575 MCM9Q9NXL9 1143 aa14.49□□□□□ -0.09
LINC00539-202ENST00000423575 PALD1Q9ULE6 856 aa14.49□□□□□ -0.09
LINC00539-202ENST00000423575 CDK5RAP2Q96SN8 1893 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 FOCADQ5VW36 1801 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 APPP05067 770 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 SLURP2P0DP57 97 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 HSPD1P10809 573 aaKnown RBP14.48□□□□□ -0.09
LINC00539-202ENST00000423575 TDO2P48775 406 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 GIMAP6Q6P9H5 292 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 IFNL3Q8IZI9 196 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 CSRNP1Q96S65 589 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 NAV1Q8NEY1 1877 aa14.48□□□□□ -0.09
LINC00539-202ENST00000423575 POLR2AP24928 1970 aaKnown RBP14.47□□□□□ -0.09
LINC00539-202ENST00000423575 CYP2D7A0A087X1C5 515 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 USP17L12C9JPN9 530 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 USP17L21D6R901 530 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 SMIM22K7EJ46 135 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 PTH1RQ03431 593 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 ALX1Q15699 326 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 CTR9Q6PD62 1173 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 DDRGK1Q96HY6 314 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 NACAP1Q9BZK3 213 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 DHX36Q9H2U1 1008 aaKnown RBP14.47□□□□□ -0.09
LINC00539-202ENST00000423575 ZNF408Q9H9D4 720 aa14.47□□□□□ -0.09
LINC00539-202ENST00000423575 POLR3DP05423 398 aaPredicted RBP14.46□□□□□ -0.09
LINC00539-202ENST00000423575 PLCD1P51178 756 aa14.46□□□□□ -0.09
LINC00539-202ENST00000423575 SUPT20HL1Q3ZLR7 823 aa14.46□□□□□ -0.09
LINC00539-202ENST00000423575 DSCC1Q9BVC3 393 aa14.46□□□□□ -0.09
LINC00539-202ENST00000423575 NAPBQ9H115 298 aa14.46□□□□□ -0.09
LINC00539-202ENST00000423575 ARPP21Q9UBL0 812 aaPredicted RBP14.46□□□□□ -0.09
LINC00539-202ENST00000423575 FZD1Q9UP38 647 aa14.46□□□□□ -0.09
LINC00539-202ENST00000423575 ZMYM6O95789 1325 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 FAM196BA6NMK8 535 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 CELF2O95319 508 aaKnown RBP14.45□□□□□ -0.1
LINC00539-202ENST00000423575 FGAP02671 866 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 HLA-DOAP06340 250 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 SBK1Q52WX2 424 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 C12orf60Q5U649 245 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 CST9Q5W186 159 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 MIGA2Q7L4E1 593 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 TTC6Q86TZ1 520 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 LSG1Q9H089 658 aaKnown RBP14.45□□□□□ -0.1
LINC00539-202ENST00000423575 DNAJC18Q9H819 358 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 ANO2Q9NQ90 1003 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 PI4KBQ9UBF8 816 aa14.45□□□□□ -0.1
LINC00539-202ENST00000423575 SIPA1L1O43166 1804 aa14.44□□□□□ -0.1
LINC00539-202ENST00000423575 NF2P35240 595 aa14.44□□□□□ -0.1
LINC00539-202ENST00000423575 PRKG1Q13976 671 aa14.44□□□□□ -0.1
LINC00539-202ENST00000423575 MOB2Q70IA6 237 aa14.44□□□□□ -0.1
LINC00539-202ENST00000423575 METTL16Q86W50 562 aaKnown RBP14.44□□□□□ -0.1
LINC00539-202ENST00000423575 DYNLL2Q96FJ2 89 aa14.44□□□□□ -0.1
LINC00539-202ENST00000423575 EHD4Q9H223 541 aa14.44□□□□□ -0.1
LINC00539-202ENST00000423575 SERPINB13Q9UIV8 391 aa14.44□□□□□ -0.1
LINC00539-202ENST00000423575 ROBO3Q96MS0 1386 aa14.44□□□□□ -0.1
LINC00539-202ENST00000423575 BAZ2AQ9UIF9 1905 aaKnown RBP14.43□□□□□ -0.1
LINC00539-202ENST00000423575 MINDY4BA8MYZ0 360 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms