RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 MAP3K12Q12852 859 aa13.32□□□□□ -0.28
USP49-204ENST00000423567 MKRN3Q13064 507 aaKnown RBP13.32□□□□□ -0.28
USP49-204ENST00000423567 AAMPQ13685 434 aa13.32□□□□□ -0.28
USP49-204ENST00000423567 ZSCAN29Q8IWY8 852 aaPredicted RBP13.32□□□□□ -0.28
USP49-204ENST00000423567 CDAN1Q8IWY9 1227 aa13.32□□□□□ -0.28
USP49-204ENST00000423567 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP49-204ENST00000423567 ZNF341Q9BYN7 854 aa13.32□□□□□ -0.28
USP49-204ENST00000423567 PIH1D3Q9NQM4 214 aaKnown RBP13.32□□□□□ -0.28
USP49-204ENST00000423567 ZBTB47Q9UFB7 747 aaPredicted RBP13.32□□□□□ -0.28
USP49-204ENST00000423567 ZBTB48P10074 688 aaPredicted RBP13.31□□□□□ -0.28
USP49-204ENST00000423567 PICALMQ13492 652 aa13.31□□□□□ -0.28
USP49-204ENST00000423567 SPRYD7Q5W111 196 aa13.31□□□□□ -0.28
USP49-204ENST00000423567 TMED8Q6PL24 325 aaPredicted RBP13.31□□□□□ -0.28
USP49-204ENST00000423567 GPATCH3Q96I76 525 aa13.31□□□□□ -0.28
USP49-204ENST00000423567 CLMNQ96JQ2 1002 aa13.31□□□□□ -0.28
USP49-204ENST00000423567 CSRNP1Q96S65 589 aa13.31□□□□□ -0.28
USP49-204ENST00000423567 DNAJC2Q99543 621 aaKnown RBP13.31□□□□□ -0.28
USP49-204ENST00000423567 FAM198AQ9UFP1 575 aa13.31□□□□□ -0.28
USP49-204ENST00000423567 PCDHB15Q9Y5E8 787 aa13.31□□□□□ -0.28
USP49-204ENST00000423567 WDHD1O75717 1129 aaPredicted RBP13.3□□□□□ -0.28
USP49-204ENST00000423567 HSPA8P11142 646 aaKnown RBP13.3□□□□□ -0.28
USP49-204ENST00000423567 LBX1P52954 281 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 MIGA2Q7L4E1 593 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 CERS3Q8IU89 383 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 TEX11Q8IYF3 940 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP49-204ENST00000423567 ZNF384Q8TF68 577 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 WNK4Q96J92 1243 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 WRNIP1Q96S55 665 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 ELP3Q9H9T3 547 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 PRDM10Q9NQV6 1147 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 SAGE1Q9NXZ1 904 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 AATFQ9NY61 560 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP49-204ENST00000423567 NDUFB9Q9Y6M9 179 aa13.3□□□□□ -0.28
USP49-204ENST00000423567 MANSC4A6NHS7 340 aaPredicted RBP13.29□□□□□ -0.28
USP49-204ENST00000423567 GOLIM4O00461 696 aa13.29□□□□□ -0.28
USP49-204ENST00000423567 SMARCA5O60264 1052 aaPredicted RBP13.29□□□□□ -0.28
USP49-204ENST00000423567 ATP5JP18859 108 aa13.29□□□□□ -0.28
USP49-204ENST00000423567 CYP7A1P22680 504 aa13.29□□□□□ -0.28
USP49-204ENST00000423567 INHBEP58166 350 aa13.29□□□□□ -0.28
USP49-204ENST00000423567 RHBDL3P58872 404 aa13.29□□□□□ -0.28
USP49-204ENST00000423567 MAGEB6Q8N7X4 407 aa13.29□□□□□ -0.28
USP49-204ENST00000423567 TRPA1O75762 1119 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 PPP4CP60510 307 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 VGLL4Q14135 290 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.28□□□□□ -0.28
USP49-204ENST00000423567 ZFPM1Q8IX07 1006 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 OPTNQ96CV9 577 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 BOLA2Q9H3K6 86 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 ANTXR1Q9H6X2 564 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 DDX4Q9NQI0 724 aaKnown RBP13.28□□□□□ -0.28
USP49-204ENST00000423567 ECHDC1Q9NTX5 307 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 PAG1Q9NWQ8 432 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 RNF186Q9NXI6 227 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 TSKSQ9UJT2 592 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 SUPT16HQ9Y5B9 1047 aaKnown RBP13.28□□□□□ -0.28
USP49-204ENST00000423567 MYH2Q9UKX2 1941 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 RFX7Q2KHR2 1363 aa13.28□□□□□ -0.28
USP49-204ENST00000423567 ALDH1A1P00352 501 aa13.27□□□□□ -0.29
USP49-204ENST00000423567 TM4SF4P48230 202 aa13.27□□□□□ -0.29
USP49-204ENST00000423567 COL13A1Q5TAT6 717 aaPredicted RBP13.27□□□□□ -0.29
USP49-204ENST00000423567 OTUD7BQ6GQQ9 843 aa13.27□□□□□ -0.29
USP49-204ENST00000423567 ERO1BQ86YB8 467 aa13.27□□□□□ -0.29
USP49-204ENST00000423567 SH3RF3Q8TEJ3 882 aaPredicted RBP13.27□□□□□ -0.29
USP49-204ENST00000423567 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.27□□□□□ -0.29
USP49-204ENST00000423567 DDTLA6NHG4 134 aaPredicted RBP13.26□□□□□ -0.29
USP49-204ENST00000423567 GTF2A2P52657 109 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 HDAC1Q13547 482 aaPredicted RBP13.26□□□□□ -0.29
USP49-204ENST00000423567 SLC9C2Q5TAH2 1124 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 MAST2Q6P0Q8 1798 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 ADGRA1Q86SQ6 560 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 MIGA1Q8NAN2 632 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 TGFBRAP1Q8WUH2 860 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 ZKSCAN4Q969J2 545 aaPredicted RBP13.26□□□□□ -0.29
USP49-204ENST00000423567 GCC1Q96CN9 775 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 OTUD5Q96G74 571 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 PHF12Q96QT6 1004 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 HAUS7Q99871 368 aa13.26□□□□□ -0.29
USP49-204ENST00000423567 OSBPL5Q9H0X9 879 aaPredicted RBP13.26□□□□□ -0.29
USP49-204ENST00000423567 TSPYL2Q9H2G4 693 aaPredicted RBP13.26□□□□□ -0.29
USP49-204ENST00000423567 DHX36Q9H2U1 1008 aaKnown RBP13.26□□□□□ -0.29
USP49-204ENST00000423567 RWDD1Q9H446 243 aaPredicted RBP13.26□□□□□ -0.29
USP49-204ENST00000423567 ATRNL1Q5VV63 1379 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 SPDYE5A6NIY4 337 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 PDE6AP16499 860 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 USP5P45974 858 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 VASPP50552 380 aaPredicted RBP13.25□□□□□ -0.29
USP49-204ENST00000423567 ZSCAN25Q6NSZ9 544 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 MAPKAPK5Q8IW41 473 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 TNS4Q8IZW8 715 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 TRIM34Q9BYJ4 488 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 ZNF112Q9UJU3 913 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 SNCAIPQ9Y6H5 919 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 AKAP11Q9UKA4 1901 aa13.25□□□□□ -0.29
USP49-204ENST00000423567 COL2A1P02458 1487 aaPredicted RBP13.24□□□□□ -0.29
USP49-204ENST00000423567 PCNTO95613 3336 aa13.24□□□□□ -0.29
USP49-204ENST00000423567 FLT1P17948 1338 aa13.24□□□□□ -0.29
USP49-204ENST00000423567 MAGEB6P1A0A0J9YX57 407 aa13.24□□□□□ -0.29
USP49-204ENST00000423567 ERC2O15083 957 aa13.24□□□□□ -0.29
USP49-204ENST00000423567 TBC1D12O60347 775 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms