RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 DOCK1Q14185 1865 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 GAKO14976 1311 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 E9PSI1 815 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 GNRH1P01148 92 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 UBTFL1P0CB47 393 aaPredicted RBP16.06■□□□□ 0.16
LINC00339-203ENST00000420503 PTPRAP18433 802 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 PICALMQ13492 652 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 CCDC102BQ68D86 513 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 GADL1Q6ZQY3 521 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 SCYL3Q8IZE3 742 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 DPF3Q92784 378 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 PARK7Q99497 189 aaKnown RBP16.06■□□□□ 0.16
LINC00339-203ENST00000420503 MEIS3Q99687 375 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 RNF208Q9H0X6 261 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 CEP126Q9P2H0 1117 aa16.06■□□□□ 0.16
LINC00339-203ENST00000420503 SALL1Q9NSC2 1324 aa16.05■□□□□ 0.16
LINC00339-203ENST00000420503 A0A0G2JLL6 359 aaPredicted RBP16.05■□□□□ 0.16
LINC00339-203ENST00000420503 CIAO1O76071 339 aa16.05■□□□□ 0.16
LINC00339-203ENST00000420503 PRMT2P55345 433 aa16.05■□□□□ 0.16
LINC00339-203ENST00000420503 TIMM10P62072 90 aa16.05■□□□□ 0.16
LINC00339-203ENST00000420503 PI16Q6UXB8 463 aa16.05■□□□□ 0.16
LINC00339-203ENST00000420503 PRRT2Q7Z6L0 340 aaPredicted RBP16.05■□□□□ 0.16
LINC00339-203ENST00000420503 BIN2Q9UBW5 565 aaPredicted RBP16.05■□□□□ 0.16
LINC00339-203ENST00000420503 NOB1Q9ULX3 412 aaKnown RBP16.05■□□□□ 0.16
LINC00339-203ENST00000420503 ALPK3Q96L96 1907 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 TRIM75PA6NK02 468 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 CXCL11O14625 94 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 GJB1P08034 283 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 BTDP43251 543 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 GJA8P48165 433 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 RRP1BQ14684 758 aaKnown RBP16.04■□□□□ 0.16
LINC00339-203ENST00000420503 TREML2Q5T2D2 321 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 ZSCAN29Q8IWY8 852 aaPredicted RBP16.04■□□□□ 0.16
LINC00339-203ENST00000420503 IDI2Q9BXS1 227 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 ABCF2Q9UG63 623 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 TNNQ9UQP3 1299 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 AFG3L2Q9Y4W6 797 aa16.04■□□□□ 0.16
LINC00339-203ENST00000420503 FLT3LGP49771 235 aa16.03■□□□□ 0.16
LINC00339-203ENST00000420503 FCGRTP55899 365 aa16.03■□□□□ 0.16
LINC00339-203ENST00000420503 U2AF1L4Q8WU68 220 aaKnown RBP16.03■□□□□ 0.16
LINC00339-203ENST00000420503 DENND2AQ9ULE3 1009 aa16.03■□□□□ 0.16
LINC00339-203ENST00000420503 ENTPD3O75355 529 aa16.02■□□□□ 0.16
LINC00339-203ENST00000420503 INHAP05111 366 aa16.02■□□□□ 0.16
LINC00339-203ENST00000420503 IL15P40933 162 aaPredicted RBP16.02■□□□□ 0.16
LINC00339-203ENST00000420503 RHBDL3P58872 404 aa16.02■□□□□ 0.16
LINC00339-203ENST00000420503 TFCP2Q12800 502 aa16.02■□□□□ 0.16
LINC00339-203ENST00000420503 ALDH1L2Q3SY69 923 aa16.02■□□□□ 0.16
LINC00339-203ENST00000420503 TBC1D9Q6ZT07 1266 aa16.02■□□□□ 0.16
LINC00339-203ENST00000420503 DZIP1Q86YF9 867 aaKnown RBP16.02■□□□□ 0.16
LINC00339-203ENST00000420503 PICK1Q9NRD5 415 aa16.02■□□□□ 0.16
LINC00339-203ENST00000420503 GNL3LQ9NVN8 582 aaKnown RBP16.02■□□□□ 0.16
LINC00339-203ENST00000420503 LAMA3Q16787 3333 aa16.02■□□□□ 0.15
LINC00339-203ENST00000420503 ADCY3O60266 1144 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 PEX10O60683 326 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 FARP2O94887 1054 aaPredicted RBP16.01■□□□□ 0.15
LINC00339-203ENST00000420503 HOXD10P28358 340 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 MECOMQ03112 1051 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 ANKRD13CQ8N6S4 541 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 PRO3102Q9H379 93 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 COPRSQ9NQ92 184 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 TAOK2Q9UL54 1235 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 ATAD5Q96QE3 1844 aa16.01■□□□□ 0.15
LINC00339-203ENST00000420503 MROH7-TTC4A0A0A0MT08 1334 aa16■□□□□ 0.15
LINC00339-203ENST00000420503 A0A1B0GUL7 405 aa16■□□□□ 0.15
LINC00339-203ENST00000420503 SEMA3EO15041 775 aa16■□□□□ 0.15
LINC00339-203ENST00000420503 MAP3K10Q02779 954 aa16■□□□□ 0.15
LINC00339-203ENST00000420503 SHROOM1Q2M3G4 852 aaPredicted RBP16■□□□□ 0.15
LINC00339-203ENST00000420503 TRMT2AQ8IZ69 625 aaKnown RBP16■□□□□ 0.15
LINC00339-203ENST00000420503 DIS3LQ8TF46 1054 aaKnown RBP16■□□□□ 0.15
LINC00339-203ENST00000420503 XAGE2Q96GT9 111 aa16■□□□□ 0.15
LINC00339-203ENST00000420503 SIPA1L1O43166 1804 aa16■□□□□ 0.15
LINC00339-203ENST00000420503 SOX1O00570 391 aaPredicted RBP15.99■□□□□ 0.15
LINC00339-203ENST00000420503 TNPO2O14787 897 aaKnown RBP15.99■□□□□ 0.15
LINC00339-203ENST00000420503 TRIM32Q13049 653 aa15.99■□□□□ 0.15
LINC00339-203ENST00000420503 SLAIN1Q8ND83 568 aa15.99■□□□□ 0.15
LINC00339-203ENST00000420503 DEFB118Q96PH6 123 aa15.99■□□□□ 0.15
LINC00339-203ENST00000420503 FBXO3Q9UK99 471 aa15.99■□□□□ 0.15
LINC00339-203ENST00000420503 LOC285556D6RIA3 1793 aa15.98■□□□□ 0.15
LINC00339-203ENST00000420503 ZBTB7BO15156 539 aaPredicted RBP15.98■□□□□ 0.15
LINC00339-203ENST00000420503 SGPL1O95470 568 aa15.98■□□□□ 0.15
LINC00339-203ENST00000420503 UBXN2AP68543 259 aa15.98■□□□□ 0.15
LINC00339-203ENST00000420503 JAG1P78504 1218 aa15.98■□□□□ 0.15
LINC00339-203ENST00000420503 FASTKD5Q7L8L6 764 aaKnown RBP15.98■□□□□ 0.15
LINC00339-203ENST00000420503 SMCR8Q8TEV9 937 aaPredicted RBP15.98■□□□□ 0.15
LINC00339-203ENST00000420503 HMG20BQ9P0W2 317 aa15.98■□□□□ 0.15
LINC00339-203ENST00000420503 PLXNB2O15031 1838 aa15.97■□□□□ 0.15
LINC00339-203ENST00000420503 GPR75-ASB3A0A0A6YYF3 556 aa15.97■□□□□ 0.15
LINC00339-203ENST00000420503 CTNND1O60716 968 aaKnown RBP15.97■□□□□ 0.15
LINC00339-203ENST00000420503 NKX2-3Q8TAU0 364 aa15.97■□□□□ 0.15
LINC00339-203ENST00000420503 FAM163AQ96GL9 167 aaPredicted RBP15.97■□□□□ 0.15
LINC00339-203ENST00000420503 AGTPBP1Q9UPW5 1226 aa15.97■□□□□ 0.15
LINC00339-203ENST00000420503 SRGAP3O43295 1099 aa15.96■□□□□ 0.15
LINC00339-203ENST00000420503 HMGCS2P54868 508 aa15.96■□□□□ 0.15
LINC00339-203ENST00000420503 SPP2Q13103 211 aa15.96■□□□□ 0.15
LINC00339-203ENST00000420503 LRCH3Q96II8 777 aa15.96■□□□□ 0.15
LINC00339-203ENST00000420503 NEUROD6Q96NK8 337 aa15.96■□□□□ 0.15
LINC00339-203ENST00000420503 MYO5AQ9Y4I1 1855 aaKnown RBP15.96■□□□□ 0.15
LINC00339-203ENST00000420503 TFRCP02786 760 aaKnown RBP15.95■□□□□ 0.14
LINC00339-203ENST00000420503 ERICH6Q7L0X2 663 aa15.95■□□□□ 0.14
LINC00339-203ENST00000420503 ZGPATQ8N5A5 531 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms