RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 UNC93B1Q9H1C4 597 aa16.08■□□□□ 0.16
LINC00339-202ENST00000416769 SMC4Q9NTJ3 1288 aa16.08■□□□□ 0.16
LINC00339-202ENST00000416769 WDHD1O75717 1129 aaPredicted RBP16.07■□□□□ 0.16
LINC00339-202ENST00000416769 ELNP15502 786 aa16.07■□□□□ 0.16
LINC00339-202ENST00000416769 RASGRF1Q13972 1273 aa16.07■□□□□ 0.16
LINC00339-202ENST00000416769 ZNF384Q8TF68 577 aa16.07■□□□□ 0.16
LINC00339-202ENST00000416769 RBM27Q9P2N5 1060 aaKnown RBP16.07■□□□□ 0.16
LINC00339-202ENST00000416769 ZHX2Q9Y6X8 837 aa16.07■□□□□ 0.16
LINC00339-202ENST00000416769 DOCK1Q14185 1865 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 GAKO14976 1311 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 E9PSI1 815 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 GNRH1P01148 92 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 UBTFL1P0CB47 393 aaPredicted RBP16.06■□□□□ 0.16
LINC00339-202ENST00000416769 PTPRAP18433 802 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 PICALMQ13492 652 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 CCDC102BQ68D86 513 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 GADL1Q6ZQY3 521 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 SCYL3Q8IZE3 742 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 DPF3Q92784 378 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 PARK7Q99497 189 aaKnown RBP16.06■□□□□ 0.16
LINC00339-202ENST00000416769 MEIS3Q99687 375 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 RNF208Q9H0X6 261 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 CEP126Q9P2H0 1117 aa16.06■□□□□ 0.16
LINC00339-202ENST00000416769 SALL1Q9NSC2 1324 aa16.05■□□□□ 0.16
LINC00339-202ENST00000416769 A0A0G2JLL6 359 aaPredicted RBP16.05■□□□□ 0.16
LINC00339-202ENST00000416769 CIAO1O76071 339 aa16.05■□□□□ 0.16
LINC00339-202ENST00000416769 PRMT2P55345 433 aa16.05■□□□□ 0.16
LINC00339-202ENST00000416769 TIMM10P62072 90 aa16.05■□□□□ 0.16
LINC00339-202ENST00000416769 PI16Q6UXB8 463 aa16.05■□□□□ 0.16
LINC00339-202ENST00000416769 PRRT2Q7Z6L0 340 aaPredicted RBP16.05■□□□□ 0.16
LINC00339-202ENST00000416769 BIN2Q9UBW5 565 aaPredicted RBP16.05■□□□□ 0.16
LINC00339-202ENST00000416769 NOB1Q9ULX3 412 aaKnown RBP16.05■□□□□ 0.16
LINC00339-202ENST00000416769 ALPK3Q96L96 1907 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 TRIM75PA6NK02 468 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 CXCL11O14625 94 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 GJB1P08034 283 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 BTDP43251 543 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 GJA8P48165 433 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 RRP1BQ14684 758 aaKnown RBP16.04■□□□□ 0.16
LINC00339-202ENST00000416769 TREML2Q5T2D2 321 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 ZSCAN29Q8IWY8 852 aaPredicted RBP16.04■□□□□ 0.16
LINC00339-202ENST00000416769 TRMT2AQ8IZ69 625 aaKnown RBP16.04■□□□□ 0.16
LINC00339-202ENST00000416769 IDI2Q9BXS1 227 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 ABCF2Q9UG63 623 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 TNNQ9UQP3 1299 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 AFG3L2Q9Y4W6 797 aa16.04■□□□□ 0.16
LINC00339-202ENST00000416769 FLT3LGP49771 235 aa16.03■□□□□ 0.16
LINC00339-202ENST00000416769 FCGRTP55899 365 aa16.03■□□□□ 0.16
LINC00339-202ENST00000416769 U2AF1L4Q8WU68 220 aaKnown RBP16.03■□□□□ 0.16
LINC00339-202ENST00000416769 DENND2AQ9ULE3 1009 aa16.03■□□□□ 0.16
LINC00339-202ENST00000416769 ENTPD3O75355 529 aa16.02■□□□□ 0.16
LINC00339-202ENST00000416769 INHAP05111 366 aa16.02■□□□□ 0.16
LINC00339-202ENST00000416769 IL15P40933 162 aaPredicted RBP16.02■□□□□ 0.16
LINC00339-202ENST00000416769 RHBDL3P58872 404 aa16.02■□□□□ 0.16
LINC00339-202ENST00000416769 TFCP2Q12800 502 aa16.02■□□□□ 0.16
LINC00339-202ENST00000416769 ALDH1L2Q3SY69 923 aa16.02■□□□□ 0.16
LINC00339-202ENST00000416769 TBC1D9Q6ZT07 1266 aa16.02■□□□□ 0.16
LINC00339-202ENST00000416769 DZIP1Q86YF9 867 aaKnown RBP16.02■□□□□ 0.16
LINC00339-202ENST00000416769 PICK1Q9NRD5 415 aa16.02■□□□□ 0.16
LINC00339-202ENST00000416769 GNL3LQ9NVN8 582 aaKnown RBP16.02■□□□□ 0.16
LINC00339-202ENST00000416769 LAMA3Q16787 3333 aa16.02■□□□□ 0.15
LINC00339-202ENST00000416769 ADCY3O60266 1144 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 PEX10O60683 326 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 FARP2O94887 1054 aaPredicted RBP16.01■□□□□ 0.15
LINC00339-202ENST00000416769 HOXD10P28358 340 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 MECOMQ03112 1051 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 ANKRD13CQ8N6S4 541 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 PRO3102Q9H379 93 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 COPRSQ9NQ92 184 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 TAOK2Q9UL54 1235 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 ATAD5Q96QE3 1844 aa16.01■□□□□ 0.15
LINC00339-202ENST00000416769 MROH7-TTC4A0A0A0MT08 1334 aa16■□□□□ 0.15
LINC00339-202ENST00000416769 A0A1B0GUL7 405 aa16■□□□□ 0.15
LINC00339-202ENST00000416769 SEMA3EO15041 775 aa16■□□□□ 0.15
LINC00339-202ENST00000416769 MAP3K10Q02779 954 aa16■□□□□ 0.15
LINC00339-202ENST00000416769 SHROOM1Q2M3G4 852 aaPredicted RBP16■□□□□ 0.15
LINC00339-202ENST00000416769 DIS3LQ8TF46 1054 aaKnown RBP16■□□□□ 0.15
LINC00339-202ENST00000416769 XAGE2Q96GT9 111 aa16■□□□□ 0.15
LINC00339-202ENST00000416769 SIPA1L1O43166 1804 aa16■□□□□ 0.15
LINC00339-202ENST00000416769 SOX1O00570 391 aaPredicted RBP15.99■□□□□ 0.15
LINC00339-202ENST00000416769 TNPO2O14787 897 aaKnown RBP15.99■□□□□ 0.15
LINC00339-202ENST00000416769 TRIM32Q13049 653 aa15.99■□□□□ 0.15
LINC00339-202ENST00000416769 SLAIN1Q8ND83 568 aa15.99■□□□□ 0.15
LINC00339-202ENST00000416769 DEFB118Q96PH6 123 aa15.99■□□□□ 0.15
LINC00339-202ENST00000416769 FBXO3Q9UK99 471 aa15.99■□□□□ 0.15
LINC00339-202ENST00000416769 LOC285556D6RIA3 1793 aa15.98■□□□□ 0.15
LINC00339-202ENST00000416769 ZBTB7BO15156 539 aaPredicted RBP15.98■□□□□ 0.15
LINC00339-202ENST00000416769 SGPL1O95470 568 aa15.98■□□□□ 0.15
LINC00339-202ENST00000416769 UBXN2AP68543 259 aa15.98■□□□□ 0.15
LINC00339-202ENST00000416769 JAG1P78504 1218 aa15.98■□□□□ 0.15
LINC00339-202ENST00000416769 FASTKD5Q7L8L6 764 aaKnown RBP15.98■□□□□ 0.15
LINC00339-202ENST00000416769 SMCR8Q8TEV9 937 aaPredicted RBP15.98■□□□□ 0.15
LINC00339-202ENST00000416769 HMG20BQ9P0W2 317 aa15.98■□□□□ 0.15
LINC00339-202ENST00000416769 PLXNB2O15031 1838 aa15.97■□□□□ 0.15
LINC00339-202ENST00000416769 GPR75-ASB3A0A0A6YYF3 556 aa15.97■□□□□ 0.15
LINC00339-202ENST00000416769 CTNND1O60716 968 aaKnown RBP15.97■□□□□ 0.15
LINC00339-202ENST00000416769 NKX2-3Q8TAU0 364 aa15.97■□□□□ 0.15
LINC00339-202ENST00000416769 FAM163AQ96GL9 167 aaPredicted RBP15.97■□□□□ 0.15
LINC00339-202ENST00000416769 AGTPBP1Q9UPW5 1226 aa15.97■□□□□ 0.15
LINC00339-202ENST00000416769 SRGAP3O43295 1099 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms