RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TSKSQ9UJT2 592 aa14.8□□□□□ -0.04
CCDC88A-204ENST00000413716 FRMD3A2A2Y4 597 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 CCDC159P0C7I6 412 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 SMTNP53814 917 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 RAD51AP2Q09MP3 1159 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 IGSF3O75054 1194 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 KRT2P35908 639 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 IL1RL1Q01638 556 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 FAM186BQ8IYM0 893 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 PPWD1Q96BP3 646 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 ALG1Q9BT22 464 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 ARHGAP5Q13017 1502 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 SMARCA5O60264 1052 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 POMGNT1Q8WZA1 660 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 RTL9Q8NET4 1388 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 ZBTB43O43298 467 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 RAPGEF2Q9Y4G8 1499 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 HSPA8P11142 646 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 RFX1P22670 979 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 GNAQP50148 359 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 ANKRD35Q8N283 1001 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 PFDN6O15212 129 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 GRAMD4Q6IC98 578 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 TTLL3Q9Y4R7 772 aa14.79□□□□□ -0.04
CCDC88A-204ENST00000413716 CFAP221Q4G0U5 840 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 FNBP1Q96RU3 617 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 XRCC6P12956 609 aaKnown RBP eCLIP14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 EEF1B2P24534 225 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 CASP2P42575 452 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 PDXDC1Q6P996 788 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 IFNKQ9P0W0 207 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 MYOM3Q5VTT5 1437 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 ANGPTL3Q9Y5C1 460 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 MAD1L1Q9Y6D9 718 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 MARCKSP29966 332 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 GNGT2O14610 69 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 ZBTB24O43167 697 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 LDHCP07864 332 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 BIRC3Q13489 604 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 USP48Q86UV5 1035 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 NUTM2AQ8IVF1 878 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 MRFAP1Q9Y605 127 aa14.78□□□□□ -0.04
CCDC88A-204ENST00000413716 CLTAP09496 248 aa14.77□□□□□ -0.04
CCDC88A-204ENST00000413716 CFAP61Q8NHU2 1237 aa14.77□□□□□ -0.04
CCDC88A-204ENST00000413716 DHX58Q96C10 678 aa14.77□□□□□ -0.04
CCDC88A-204ENST00000413716 CTNND2Q9UQB3 1225 aa14.77□□□□□ -0.04
CCDC88A-204ENST00000413716 GOLGA8CPA6NN73 597 aa14.77□□□□□ -0.04
CCDC88A-204ENST00000413716 CCDC105Q8IYK2 499 aa14.77□□□□□ -0.04
CCDC88A-204ENST00000413716 AK9Q5TCS8 1911 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 TOP2AP11388 1531 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 CALUO43852 315 aaPredicted RBP14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 DEUP1Q05D60 604 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 ZGPATQ8N5A5 531 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 FBXO41Q8TF61 875 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 ZBBXA8MT70 800 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 NEK2P51955 445 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 ASIC2Q16515 512 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 CCDC13Q8IYE1 715 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 TRIM31Q9BZY9 425 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 YY1AP1Q9H869 796 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 AMOTL2Q9Y2J4 779 aa14.77□□□□□ -0.05
CCDC88A-204ENST00000413716 KRT79Q5XKE5 535 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 CDAN1Q8IWY9 1227 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 ESR2Q92731 530 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 TMCO5AQ8N6Q1 288 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 GTPBP10A4D1E9 387 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 RRP36Q96EU6 259 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 LARP6Q9BRS8 491 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 SCOCQ9UIL1 159 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 OAS2P29728 719 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 MAP7D3Q8IWC1 876 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 PDE6AP16499 860 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 KRT71Q3SY84 523 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 RSAD2Q8WXG1 361 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 NPR1P16066 1061 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 EFHD1Q9BUP0 239 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 KIFC3Q9BVG8 833 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 VPS37BQ9H9H4 285 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 TRIM75PA6NK02 468 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 PPP1R2P41236 205 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 A0A1B0GW55 424 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 DUX4L2P0CJ85 424 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 DUX4L3P0CJ86 424 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 DUX4L4P0CJ87 422 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 DUX4L5P0CJ88 424 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 DUX4L6P0CJ89 424 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 DUX4L7P0CJ90 424 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 DUX4Q9UBX2 424 aa14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 IPO11Q9UI26 975 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-204ENST00000413716 RNASE9P60153 205 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 HOMER3Q9NSC5 361 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 SART1O43290 800 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 TNFAIP3P21580 790 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 ZSCAN26Q16670 478 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 CWF19L2Q2TBE0 894 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 RAD50Q92878 1312 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 CFAP70Q5T0N1 1121 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 TMOD3Q9NYL9 352 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 SCYL1Q96KG9 808 aa14.75□□□□□ -0.05
CCDC88A-204ENST00000413716 WBP4O75554 376 aaKnown RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms