RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 SH3BP5LQ7L8J4 393 aa18.08■□□□□ 0.48
LIMS4-201ENST00000413601 ADGRA1Q86SQ6 560 aa18.08■□□□□ 0.48
LIMS4-201ENST00000413601 ZSCAN29Q8IWY8 852 aaPredicted RBP18.08■□□□□ 0.48
LIMS4-201ENST00000413601 CNKSR2Q8WXI2 1034 aa18.08■□□□□ 0.48
LIMS4-201ENST00000413601 CRBNQ96SW2 442 aa18.08■□□□□ 0.48
LIMS4-201ENST00000413601 NOL10Q9BSC4 688 aaKnown RBP18.08■□□□□ 0.48
LIMS4-201ENST00000413601 ZNF341Q9BYN7 854 aa18.08■□□□□ 0.48
LIMS4-201ENST00000413601 LRRCC1Q9C099 1032 aa18.08■□□□□ 0.48
LIMS4-201ENST00000413601 PCDHB15Q9Y5E8 787 aa18.08■□□□□ 0.48
LIMS4-201ENST00000413601 MYH7P12883 1935 aa18.08■□□□□ 0.48
LIMS4-201ENST00000413601 MANSC4A6NHS7 340 aaPredicted RBP18.07■□□□□ 0.48
LIMS4-201ENST00000413601 SMARCA5O60264 1052 aaPredicted RBP18.07■□□□□ 0.48
LIMS4-201ENST00000413601 IDH1O75874 414 aaKnown RBP18.07■□□□□ 0.48
LIMS4-201ENST00000413601 AATFQ9NY61 560 aaKnown RBP eCLIP18.07■□□□□ 0.48
LIMS4-201ENST00000413601 MYH1P12882 1939 aa18.07■□□□□ 0.48
LIMS4-201ENST00000413601 DDTLA6NHG4 134 aaPredicted RBP18.06■□□□□ 0.48
LIMS4-201ENST00000413601 MAP4K4O95819 1239 aaPredicted RBP18.06■□□□□ 0.48
LIMS4-201ENST00000413601 IFFO2Q5TF58 517 aa18.06■□□□□ 0.48
LIMS4-201ENST00000413601 TEX11Q8IYF3 940 aa18.06■□□□□ 0.48
LIMS4-201ENST00000413601 SH3RF3Q8TEJ3 882 aaPredicted RBP18.06■□□□□ 0.48
LIMS4-201ENST00000413601 DCTPP1Q9H773 170 aa18.06■□□□□ 0.48
LIMS4-201ENST00000413601 SNCAIPQ9Y6H5 919 aa18.06■□□□□ 0.48
LIMS4-201ENST00000413601 ATAD5Q96QE3 1844 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 TBC1D8O95759 1140 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 BAG3O95817 575 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 CYP7A1P22680 504 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 INPP5BP32019 993 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 INHBEP58166 350 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 OTUD5Q96G74 571 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 ZNF112Q9UJU3 913 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 DOCK1Q14185 1865 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 SIPA1L1O43166 1804 aa18.05■□□□□ 0.48
LIMS4-201ENST00000413601 ATRNL1Q5VV63 1379 aa18.04■□□□□ 0.48
LIMS4-201ENST00000413601 SPDYE5A6NIY4 337 aa18.04■□□□□ 0.48
LIMS4-201ENST00000413601 IGSF3O75054 1194 aa18.04■□□□□ 0.48
LIMS4-201ENST00000413601 NPM3O75607 178 aaKnown RBP18.04■□□□□ 0.48
LIMS4-201ENST00000413601 SLURP2P0DP57 97 aa18.04■□□□□ 0.48
LIMS4-201ENST00000413601 PPP4CP60510 307 aa18.04■□□□□ 0.48
LIMS4-201ENST00000413601 IFNL1Q8IU54 200 aa18.04■□□□□ 0.48
LIMS4-201ENST00000413601 MAGEB6Q8N7X4 407 aa18.04■□□□□ 0.48
LIMS4-201ENST00000413601 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.04■□□□□ 0.48
LIMS4-201ENST00000413601 DNAJC2Q99543 621 aaKnown RBP18.04■□□□□ 0.48
LIMS4-201ENST00000413601 PHIPQ8WWQ0 1821 aa18.03■□□□□ 0.48
LIMS4-201ENST00000413601 IGF2BP3O00425 579 aaKnown RBP eCLIP18.03■□□□□ 0.48
LIMS4-201ENST00000413601 PLCG2P16885 1265 aa18.03■□□□□ 0.48
LIMS4-201ENST00000413601 DYNLL1P63167 89 aaKnown RBP18.03■□□□□ 0.48
LIMS4-201ENST00000413601 MAP3K12Q12852 859 aa18.03■□□□□ 0.48
LIMS4-201ENST00000413601 TTF1Q15361 905 aaPredicted RBP18.03■□□□□ 0.48
LIMS4-201ENST00000413601 ERO1BQ86YB8 467 aa18.03■□□□□ 0.48
LIMS4-201ENST00000413601 MS4A4AQ96JQ5 239 aa18.03■□□□□ 0.48
LIMS4-201ENST00000413601 OSBPL5Q9H0X9 879 aaPredicted RBP18.03■□□□□ 0.48
LIMS4-201ENST00000413601 PHF20L1A8MW92 1017 aa18.02■□□□□ 0.48
LIMS4-201ENST00000413601 GOLIM4O00461 696 aa18.02■□□□□ 0.48
LIMS4-201ENST00000413601 ATP5JP18859 108 aa18.02■□□□□ 0.48
LIMS4-201ENST00000413601 MIGA1Q8NAN2 632 aa18.02■□□□□ 0.48
LIMS4-201ENST00000413601 TGFBRAP1Q8WUH2 860 aa18.02■□□□□ 0.48
LIMS4-201ENST00000413601 EDC3Q96F86 508 aaKnown RBP18.02■□□□□ 0.48
LIMS4-201ENST00000413601 BOLA2Q9H3K6 86 aa18.02■□□□□ 0.48
LIMS4-201ENST00000413601 COL2A1P02458 1487 aaPredicted RBP18.01■□□□□ 0.47
LIMS4-201ENST00000413601 TESPA1A2RU30 521 aaPredicted RBP18.01■□□□□ 0.47
LIMS4-201ENST00000413601 ALDH1A1P00352 501 aa18.01■□□□□ 0.47
LIMS4-201ENST00000413601 GTF2A2P52657 109 aa18.01■□□□□ 0.47
LIMS4-201ENST00000413601 MAP3K10Q02779 954 aa18.01■□□□□ 0.47
LIMS4-201ENST00000413601 PTPN18Q99952 460 aa18.01■□□□□ 0.47
LIMS4-201ENST00000413601 R3HDMLQ9H3Y0 253 aa18.01■□□□□ 0.47
LIMS4-201ENST00000413601 PTPRFP10586 1907 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 CCL15-CCL14A0A0B4J2E2 113 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 FAM196BA6NMK8 535 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 IRF6O14896 467 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 PPIL2Q13356 520 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 CCL15Q16663 113 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 NOL9Q5SY16 702 aaKnown RBP18■□□□□ 0.47
LIMS4-201ENST00000413601 MAPKAPK5Q8IW41 473 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 BRI3BPQ8WY22 251 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 PAG1Q9NWQ8 432 aa18■□□□□ 0.47
LIMS4-201ENST00000413601 FLT1P17948 1338 aa17.99■□□□□ 0.47
LIMS4-201ENST00000413601 NAV1Q8NEY1 1877 aa17.99■□□□□ 0.47
LIMS4-201ENST00000413601 PDE6AP16499 860 aa17.99■□□□□ 0.47
LIMS4-201ENST00000413601 PPATQ06203 517 aa17.99■□□□□ 0.47
LIMS4-201ENST00000413601 SLC9C2Q5TAH2 1124 aa17.99■□□□□ 0.47
LIMS4-201ENST00000413601 OTUD7BQ6GQQ9 843 aa17.99■□□□□ 0.47
LIMS4-201ENST00000413601 HAUS7Q99871 368 aa17.99■□□□□ 0.47
LIMS4-201ENST00000413601 CFHR5Q9BXR6 569 aa17.99■□□□□ 0.47
LIMS4-201ENST00000413601 GPR25O00155 361 aa17.98■□□□□ 0.47
LIMS4-201ENST00000413601 TBC1D12O60347 775 aa17.98■□□□□ 0.47
LIMS4-201ENST00000413601 CAPN15O75808 1086 aa17.98■□□□□ 0.47
LIMS4-201ENST00000413601 TMED8Q6PL24 325 aaPredicted RBP17.98■□□□□ 0.47
LIMS4-201ENST00000413601 SCYL3Q8IZE3 742 aa17.98■□□□□ 0.47
LIMS4-201ENST00000413601 ZNF296Q8WUU4 475 aaPredicted RBP17.98■□□□□ 0.47
LIMS4-201ENST00000413601 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.98■□□□□ 0.47
LIMS4-201ENST00000413601 CETPP11597 493 aa17.97■□□□□ 0.47
LIMS4-201ENST00000413601 SNAPC2Q13487 334 aa17.97■□□□□ 0.47
LIMS4-201ENST00000413601 DGKZQ13574 1117 aa17.97■□□□□ 0.47
LIMS4-201ENST00000413601 DHX36Q9H2U1 1008 aaKnown RBP17.97■□□□□ 0.47
LIMS4-201ENST00000413601 ECHDC1Q9NTX5 307 aa17.97■□□□□ 0.47
LIMS4-201ENST00000413601 SAP30BPQ9UHR5 308 aaKnown RBP17.97■□□□□ 0.47
LIMS4-201ENST00000413601 PALD1Q9ULE6 856 aa17.97■□□□□ 0.47
LIMS4-201ENST00000413601 SUPT16HQ9Y5B9 1047 aaKnown RBP17.97■□□□□ 0.47
LIMS4-201ENST00000413601 ZNF532Q9HCE3 1301 aa17.97■□□□□ 0.47
LIMS4-201ENST00000413601 BAZ2AQ9UIF9 1905 aaKnown RBP17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms